Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQH16_RS06360 Genome accession   NZ_CP035264
Coordinates   1248411..1250159 (-) Length   582 a.a.
NCBI ID   WP_000828814.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901921     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1243411..1255159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH16_RS06345 (EQH16_06645) rplL 1245611..1245979 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  EQH16_RS06350 (EQH16_06650) rplJ 1246055..1246555 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  EQH16_RS06355 (EQH16_06660) - 1246805..1248064 (-) 1260 WP_000862494.1 TRZ/ATZ family protein -
  EQH16_RS06360 (EQH16_06665) rcrQ 1248411..1250159 (-) 1749 WP_000828814.1 ABC transporter ATP-binding protein Regulator
  EQH16_RS06365 (EQH16_06670) - 1250161..1251885 (-) 1725 WP_000681697.1 ABC transporter ATP-binding protein -
  EQH16_RS06370 (EQH16_06675) msrB 1251943..1252881 (-) 939 WP_000818207.1 peptide-methionine (R)-S-oxide reductase MsrB -
  EQH16_RS06375 (EQH16_06680) - 1252910..1253506 (-) 597 WP_238090262.1 hypothetical protein -
  EQH16_RS06380 (EQH16_06685) thrB 1253582..1254451 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64890.39 Da        Isoelectric Point: 7.3120

>NTDB_id=297922 EQH16_RS06360 WP_000828814.1 1248411..1250159(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901921]
MKRQTVNQTLKRLALDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKIAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRASLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDTFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=297922 EQH16_RS06360 WP_000828814.1 1248411..1250159(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901921]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCTTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTAGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTGCGAGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCTTTTGTAGATAGGCAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGATAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGCATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATTCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATACCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(24-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.434

97.766

0.366