Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EQH17_RS06880 Genome accession   NZ_CP035263
Coordinates   1398051..1398773 (-) Length   240 a.a.
NCBI ID   WP_001010368.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901922     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1393051..1403773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH17_RS06870 (EQH17_07275) - 1395625..1396791 (-) 1167 WP_000521363.1 MalY/PatB family protein -
  EQH17_RS06875 (EQH17_07280) - 1396799..1397893 (-) 1095 WP_000031960.1 cystathionine gamma-synthase -
  EQH17_RS06880 rcrP 1398051..1398773 (-) 723 WP_001010368.1 ABC transporter ATP-binding protein Regulator
  EQH17_RS06885 (EQH17_07290) - 1398960..1399726 (-) 767 Protein_1382 ABC transporter ATP-binding protein -
  EQH17_RS06890 (EQH17_07295) amiA 1399898..1401856 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  EQH17_RS06895 (EQH17_07300) - 1402060..1403682 (-) 1623 WP_000017797.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27287.14 Da        Isoelectric Point: 5.0452

>NTDB_id=297804 EQH17_RS06880 WP_001010368.1 1398051..1398773(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901922]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=297804 EQH17_RS06880 WP_001010368.1 1398051..1398773(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901922]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAGAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363