Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQH23_RS06425 Genome accession   NZ_CP035257
Coordinates   1289930..1291678 (-) Length   582 a.a.
NCBI ID   WP_000828819.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901928     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284930..1296678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH23_RS06385 (EQH23_06755) - 1285428..1285622 (-) 195 WP_000840774.1 hypothetical protein -
  EQH23_RS06390 (EQH23_06760) - 1285635..1286015 (-) 381 WP_000566546.1 arsenate reductase family protein -
  EQH23_RS06395 (EQH23_06765) - 1286008..1286331 (-) 324 WP_002198220.1 hypothetical protein -
  EQH23_RS06400 (EQH23_06770) - 1286342..1286593 (-) 252 Protein_1281 replication initiator protein A -
  EQH23_RS06405 (EQH23_06775) - 1286590..1286763 (-) 174 WP_001168349.1 hypothetical protein -
  EQH23_RS06410 (EQH23_06780) rplL 1286950..1287318 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  EQH23_RS06415 (EQH23_06785) rplJ 1287394..1287894 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  EQH23_RS06420 (EQH23_06795) - 1288144..1289403 (-) 1260 WP_000862494.1 TRZ/ATZ family protein -
  EQH23_RS06425 (EQH23_06800) rcrQ 1289930..1291678 (-) 1749 WP_000828819.1 ABC transporter ATP-binding protein Regulator
  EQH23_RS06430 (EQH23_06805) - 1291680..1293404 (-) 1725 WP_000681703.1 ABC transporter ATP-binding protein -
  EQH23_RS06435 (EQH23_06810) msrB 1293464..1294402 (-) 939 WP_000818207.1 peptide-methionine (R)-S-oxide reductase MsrB -
  EQH23_RS06440 (EQH23_06815) - 1294469..1294621 (-) 153 WP_001822048.1 hypothetical protein -
  EQH23_RS06445 (EQH23_06820) thrB 1294697..1295566 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64882.38 Da        Isoelectric Point: 7.3458

>NTDB_id=297090 EQH23_RS06425 WP_000828819.1 1289930..1291678(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901928]
MKRQTVNQTLKRLAVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPIFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFADRQGNGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTHLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRVSLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=297090 EQH23_RS06425 WP_000828819.1 1289930..1291678(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901928]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
TTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAATTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGAGAGCGAATCATCCATAAACTCCATCG
GTTACCGATTGCTTTTGCGGATCGGCAAGGCAATGGAGAGATGGTCAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGGATTCAGACCCATTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAGTTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCGACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.258

97.766

0.364