Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQH24_RS06560 Genome accession   NZ_CP035256
Coordinates   1289636..1291384 (-) Length   582 a.a.
NCBI ID   WP_000828825.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901930     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1284636..1296384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH24_RS06515 (EQH24_06840) - 1284673..1285227 (-) 555 WP_050153554.1 CPBP family intramembrane glutamic endopeptidase -
  EQH24_RS06520 (EQH24_06845) - 1285230..1285463 (-) 234 WP_000840778.1 hypothetical protein -
  EQH24_RS06525 (EQH24_06850) - 1285476..1285856 (-) 381 WP_000566537.1 hypothetical protein -
  EQH24_RS06530 (EQH24_06855) - 1285849..1286187 (-) 339 Protein_1311 hypothetical protein -
  EQH24_RS06535 (EQH24_06860) - 1286183..1286434 (-) 252 Protein_1312 replication initiator protein A -
  EQH24_RS06540 (EQH24_06865) - 1286434..1286604 (-) 171 WP_001168348.1 hypothetical protein -
  EQH24_RS06545 (EQH24_06870) rplL 1286791..1287159 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  EQH24_RS06550 (EQH24_06875) rplJ 1287235..1287735 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  EQH24_RS06555 (EQH24_06885) - 1287985..1289244 (-) 1260 WP_001858999.1 TRZ/ATZ family protein -
  EQH24_RS06560 (EQH24_06890) rcrQ 1289636..1291384 (-) 1749 WP_000828825.1 ABC transporter ATP-binding protein Regulator
  EQH24_RS06565 (EQH24_06895) - 1291386..1293110 (-) 1725 WP_023396329.1 ABC transporter ATP-binding protein -
  EQH24_RS06570 (EQH24_06900) msrB 1293168..1294106 (-) 939 WP_000818203.1 peptide-methionine (R)-S-oxide reductase MsrB -
  EQH24_RS06575 (EQH24_06905) - 1294173..1294325 (-) 153 WP_001835993.1 hypothetical protein -
  EQH24_RS06580 (EQH24_06910) thrB 1294401..1295270 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64859.34 Da        Isoelectric Point: 7.3120

>NTDB_id=296966 EQH24_RS06560 WP_000828825.1 1289636..1291384(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901930]
MKRQTVNQTLKRLAVDLANHPFLLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFADRQGNGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRVSLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=296966 EQH24_RS06560 WP_000828825.1 1289636..1291384(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901930]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCGTAGATTTAGCAAACCATCCCTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGAGAGCGAATCATCCATAAACTCCATCG
GTTACCGATTGCTTTTGCGGATCGGCAAGGCAATGGAGAGATGGTCAGTCGTGTAACCACGGATATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGGATTCAGACCCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAGTTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTAGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATTCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.434

97.766

0.366