Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EQH26_RS07115 Genome accession   NZ_CP035254
Coordinates   1407175..1407897 (-) Length   240 a.a.
NCBI ID   WP_001010366.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901932     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1402175..1412897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH26_RS07105 (EQH26_07515) - 1404749..1405915 (-) 1167 WP_000521368.1 MalY/PatB family protein -
  EQH26_RS07110 (EQH26_07520) - 1405923..1407017 (-) 1095 WP_000031964.1 cystathionine gamma-synthase -
  EQH26_RS07115 rcrP 1407175..1407897 (-) 723 WP_001010366.1 ABC transporter ATP-binding protein Regulator
  EQH26_RS07120 - 1407922..1408857 (-) 936 WP_000768992.1 ABC transporter ATP-binding protein -
  EQH26_RS07125 (EQH26_07530) amiA 1409029..1410987 (-) 1959 WP_000748875.1 peptide ABC transporter substrate-binding protein Regulator
  EQH26_RS07130 (EQH26_07535) - 1411190..1412812 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27297.17 Da        Isoelectric Point: 5.0452

>NTDB_id=296845 EQH26_RS07115 WP_001010366.1 1407175..1407897(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901932]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLEQFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVPLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDESTANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=296845 EQH26_RS07115 WP_001010366.1 1407175..1407897(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901932]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCAGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTACCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAATCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363