Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQH26_RS06350 Genome accession   NZ_CP035254
Coordinates   1256446..1258194 (-) Length   582 a.a.
NCBI ID   WP_000828837.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901932     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251446..1263194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH26_RS06310 - 1251771..1252004 (-) 234 Protein_1264 transcriptional regulator -
  EQH26_RS06315 (EQH26_06670) - 1252017..1252397 (-) 381 WP_000566531.1 arsenate reductase family protein -
  EQH26_RS06320 (EQH26_06675) - 1252390..1252728 (-) 339 Protein_1266 hypothetical protein -
  EQH26_RS06325 (EQH26_06680) - 1252724..1252975 (-) 252 Protein_1267 replication initiator protein A -
  EQH26_RS06330 (EQH26_06685) - 1252975..1253145 (-) 171 WP_001168348.1 hypothetical protein -
  EQH26_RS06335 (EQH26_06690) rplL 1253332..1253700 (-) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  EQH26_RS06340 (EQH26_06695) rplJ 1253776..1254276 (-) 501 WP_001287278.1 50S ribosomal protein L10 -
  EQH26_RS06345 (EQH26_06705) - 1254525..1255784 (-) 1260 WP_001813130.1 TRZ/ATZ family protein -
  EQH26_RS06350 (EQH26_06710) rcrQ 1256446..1258194 (-) 1749 WP_000828837.1 ABC transporter ATP-binding protein Regulator
  EQH26_RS06355 (EQH26_06715) - 1258196..1259920 (-) 1725 WP_000681712.1 ABC transporter ATP-binding protein -
  EQH26_RS06360 (EQH26_06720) msrB 1259978..1260916 (-) 939 WP_000818203.1 peptide-methionine (R)-S-oxide reductase MsrB -
  EQH26_RS06365 (EQH26_06725) - 1260983..1261135 (-) 153 WP_001835993.1 hypothetical protein -
  EQH26_RS06370 (EQH26_06730) thrB 1261211..1262080 (-) 870 WP_000692438.1 homoserine kinase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64881.39 Da        Isoelectric Point: 7.3120

>NTDB_id=296842 EQH26_RS06350 WP_000828837.1 1256446..1258194(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901932]
MKRQTVNQTLKRLAVDLASHPFFLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKDLSIDIPAGSKIAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRVSLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=296842 EQH26_RS06350 WP_000828837.1 1256446..1258194(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901932]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCGTAGATTTAGCAAGCCATCCTTTCTTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGGGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCCTTTGTAGATAGACAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAATGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGACTTGTCTATCGATATTCCAGCTGGTAGTAAGATAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(24-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.434

97.766

0.366