Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQH28_RS09465 Genome accession   NZ_CP035252
Coordinates   1843159..1844190 (-) Length   343 a.a.
NCBI ID   WP_000506432.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901934     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838159..1849190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH28_RS09415 (EQH28_09945) - 1838302..1839063 (-) 762 WP_001107758.1 SDR family NAD(P)-dependent oxidoreductase -
  EQH28_RS09420 (EQH28_09950) ytpR 1839096..1839725 (-) 630 WP_000578314.1 YtpR family tRNA-binding protein -
  EQH28_RS09425 (EQH28_09955) - 1839741..1840058 (-) 318 WP_000615767.1 thioredoxin family protein -
  EQH28_RS09430 (EQH28_09960) - 1840055..1840354 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  EQH28_RS09435 - 1840552..1840614 (-) 63 WP_219335288.1 hypothetical protein -
  EQH28_RS09440 (EQH28_09970) - 1840639..1840830 (-) 192 WP_000291826.1 cell wall-binding protein -
  EQH28_RS09445 (EQH28_09975) - 1840991..1841665 (-) 675 WP_000725744.1 LiaF transmembrane domain-containing protein -
  EQH28_RS09450 (EQH28_09980) - 1841671..1842117 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  EQH28_RS09455 (EQH28_09985) - 1842231..1842734 (-) 504 WP_000800944.1 phosphatase PAP2 family protein -
  EQH28_RS09460 (EQH28_09990) - 1842731..1843093 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  EQH28_RS09465 rcrQ 1843159..1844190 (-) 1032 WP_000506432.1 ABC transporter ATP-binding protein Regulator
  EQH28_RS09470 rcrP 1844197..1845018 (-) 822 WP_001820424.1 ABC transporter permease Regulator
  EQH28_RS09475 (EQH28_10000) - 1845034..1845504 (-) 471 WP_000517879.1 MarR family winged helix-turn-helix transcriptional regulator -
  EQH28_RS09480 (EQH28_10010) - 1845628..1846344 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQH28_RS09485 (EQH28_10020) ply 1847227..1848642 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  EQH28_RS09490 (EQH28_10025) - 1848653..1849063 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38026.30 Da        Isoelectric Point: 4.5159

>NTDB_id=296745 EQH28_RS09465 WP_000506432.1 1843159..1844190(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901934]
MGFLLMGALFIVLPRTMVSAKRINQVLYLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTFFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=296745 EQH28_RS09465 WP_000506432.1 1843159..1844190(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901934]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
ATATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATTCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.861

100

0.382