Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EQH32_RS07085 Genome accession   NZ_CP035248
Coordinates   1392617..1393339 (-) Length   240 a.a.
NCBI ID   WP_025173476.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901939     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1387617..1398339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH32_RS07070 (EQH32_07425) - 1389213..1390166 (+) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -
  EQH32_RS07075 (EQH32_07430) - 1390191..1391357 (-) 1167 WP_001860564.1 MalY/PatB family protein -
  EQH32_RS07080 (EQH32_07435) - 1391365..1392459 (-) 1095 WP_000031966.1 cystathionine gamma-synthase -
  EQH32_RS07085 rcrP 1392617..1393339 (-) 723 WP_025173476.1 ABC transporter ATP-binding protein Regulator
  EQH32_RS07090 - 1393526..1394047 (-) 522 Protein_1418 ABC transporter transmembrane domain-containing protein -
  EQH32_RS07095 - 1394044..1394298 (-) 255 WP_001860568.1 hypothetical protein -
  EQH32_RS07100 (EQH32_07445) amiA 1394470..1396428 (-) 1959 WP_000748881.1 peptide ABC transporter substrate-binding protein Regulator
  EQH32_RS07105 (EQH32_07450) - 1396632..1398254 (-) 1623 WP_061744483.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27299.19 Da        Isoelectric Point: 5.2119

>NTDB_id=296358 EQH32_RS07085 WP_025173476.1 1392617..1393339(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901939]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISILYSALKEKTVVIIAHRLSTVKDVDCIFFLEERKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=296358 EQH32_RS07085 WP_025173476.1 1392617..1393339(-) (rcrP) [Streptococcus pneumoniae strain TVO_1901939]
TTGAATTTTAACCATGTTTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTATCCTCTATTCTGCATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTAGATTGTATTTTCTTCTTAGAGGAGAGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363