Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AWB57_RS10115 Genome accession   NZ_CP029760
Coordinates   2025450..2026103 (+) Length   217 a.a.
NCBI ID   WP_004918078.1    Uniprot ID   A0AAP6LJM8
Organism   Riemerella anatipestifer strain RCAD0133     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2020450..2031103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWB57_RS10085 (AWB57_10070) gdhA 2021082..2022440 (+) 1359 WP_049334426.1 NADP-specific glutamate dehydrogenase -
  AWB57_RS10090 (AWB57_10075) - 2022659..2023537 (+) 879 WP_127919818.1 IS982-like element ISRa1 family transposase -
  AWB57_RS10095 (AWB57_10080) - 2023554..2024162 (-) 609 Protein_1974 IS982-like element ISRa1 family transposase -
  AWB57_RS10100 (AWB57_10085) - 2024250..2024621 (+) 372 Protein_1975 HD domain-containing protein -
  AWB57_RS10105 (AWB57_10090) - 2024676..2025227 (+) 552 WP_064971215.1 hypothetical protein -
  AWB57_RS10115 (AWB57_10100) comF 2025450..2026103 (+) 654 WP_004918078.1 ComF family protein Machinery gene
  AWB57_RS12430 - 2026191..2026331 (-) 141 WP_015345427.1 hypothetical protein -
  AWB57_RS10120 (AWB57_10105) - 2026413..2027387 (+) 975 WP_064971216.1 ribonucleotide-diphosphate reductase subunit beta -
  AWB57_RS10125 (AWB57_10110) - 2027435..2029090 (+) 1656 WP_064971217.1 ribonucleoside-diphosphate reductase subunit alpha -
  AWB57_RS10130 (AWB57_10115) - 2029202..2030284 (+) 1083 WP_064971218.1 serine hydrolase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25339.46 Da        Isoelectric Point: 9.4150

>NTDB_id=295962 AWB57_RS10115 WP_004918078.1 2025450..2026103(+) (comF) [Riemerella anatipestifer strain RCAD0133]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=295962 AWB57_RS10115 WP_004918078.1 2025450..2026103(+) (comF) [Riemerella anatipestifer strain RCAD0133]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1

Multiple sequence alignment