Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQH38_RS05490 Genome accession   NZ_CP035242
Coordinates   1032832..1034580 (+) Length   582 a.a.
NCBI ID   WP_000828841.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1027832..1039580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS05470 (EQH38_05795) thrB 1028946..1029815 (+) 870 WP_000692438.1 homoserine kinase -
  EQH38_RS05475 (EQH38_05800) - 1029891..1030043 (+) 153 WP_001852357.1 hypothetical protein -
  EQH38_RS05480 (EQH38_05805) msrB 1030110..1031048 (+) 939 WP_061367439.1 peptide-methionine (R)-S-oxide reductase MsrB -
  EQH38_RS05485 (EQH38_05810) - 1031106..1032830 (+) 1725 WP_000681690.1 ABC transporter ATP-binding protein -
  EQH38_RS05490 (EQH38_05815) rcrQ 1032832..1034580 (+) 1749 WP_000828841.1 ABC transporter ATP-binding protein Regulator
  EQH38_RS05495 (EQH38_05820) - 1034882..1036141 (+) 1260 WP_001863955.1 TRZ/ATZ family protein -
  EQH38_RS05500 (EQH38_05825) - 1036411..1037364 (+) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -
  EQH38_RS05505 (EQH38_05835) rplJ 1037636..1038136 (+) 501 WP_001287279.1 50S ribosomal protein L10 -
  EQH38_RS05510 (EQH38_05840) rplL 1038212..1038580 (+) 369 WP_001196960.1 50S ribosomal protein L7/L12 -
  EQH38_RS05515 (EQH38_05845) - 1038767..1038937 (+) 171 WP_001168348.1 hypothetical protein -
  EQH38_RS05520 (EQH38_05850) - 1038937..1039188 (+) 252 Protein_1061 replication initiator protein A -
  EQH38_RS05525 (EQH38_05855) - 1039184..1039522 (+) 339 Protein_1062 hypothetical protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64881.39 Da        Isoelectric Point: 7.3120

>NTDB_id=295643 EQH38_RS05490 WP_000828841.1 1032832..1034580(+) (rcrQ) [Streptococcus pneumoniae strain TVO_1901947]
MKRQTVNQTLKRLAVDLASHPFFLFLAFLGTIAQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMLLVVIGNTLVQW
ANPLLYNRLIFSYTRDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQTEFIQRLREAHDNYSGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTVGRLVTFLNYVQQYTKPFNDISSVLAELQSALACVERIYGVL
DSPEVAETGKEVLTSDQVKGAISFKHVSFGYHPEKILIKELSIDIPAGSKVAIVGPTGAGKSTLINLLMRFYPISSGDIL
LDGQSIYDYTRVSLRQQFGMVLQETWLTQGTIHDNIAFGNPEASREQVIAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QELMDRKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=295643 EQH38_RS05490 WP_000828841.1 1032832..1034580(+) (rcrQ) [Streptococcus pneumoniae strain TVO_1901947]
ATGAAACGACAAACTGTAAACCAGACGCTCAAACGTTTAGCCGTAGATTTAGCAAGCCATCCTTTCTTCCTTTTCCTAGC
CTTTCTAGGAACTATTGCCCAAGTTGGCTTATCAATTTACCTACCTATTCTGATTGGGCAGGTCATTGACCAAGTCCTAG
TGGCTGGTTCATCACCAGTTTTTTGGCAGATTTTTCTCCAGATGCTCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGTCTAATCTTCTCTTATACCAGAGATTTACGGGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCCTTTGTAGATAGGCAAGGTAGTGGAGAGATGGTTAGTCGTGTAACCACGGACATCGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTTTTGATGATTTTGGTTAGTATTCTAGCCATGCTCCAAATT
CATCTCCTCATGACTCTCTTAGTCTTGCTGTTGACGCCACTGTCCATGGTGATTTCACGCTTTATTGCCAAGAGATCCTA
TCATCTCTTCCAGAAGCAAACAGAGACGAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAGCAGACTATAA
TCCAGTCCTTCAATGCTCAAACAGAATTTATCCAAAGATTGCGTGAGGCTCATGACAACTACTCAGGCTATTCTCAGTCA
GCCATCTTTTATTCTTCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTATGCCCTTTTAGCTGGAGTAGG
AGCTTATCGTATCATGATGGGTTCAACCTTGACCGTCGGTCGTTTAGTGACTTTTTTGAACTATGTTCAGCAATACACCA
AGCCCTTTAACGATATTTCTTCAGTGCTAGCTGAGTTGCAAAGTGCTCTGGCTTGCGTAGAGCGTATCTATGGAGTCTTA
GATAGCCCTGAAGTGGCTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTTAAGGGAGCTATTTCCTTTAAACATGT
CTCTTTTGGCTACCATCCTGAAAAAATTTTGATTAAGGAGTTGTCTATCGATATTCCAGCTGGTAGTAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGAAAATCAACTCTTATCAATCTCCTTATGCGTTTTTATCCCATTAGCTCGGGAGATATCTTG
CTGGATGGGCAATCCATTTATGATTATACACGAGTATCATTGAGACAGCAGTTTGGTATGGTGCTTCAAGAAACCTGGCT
CACACAAGGGACCATTCATGATAATATTGCCTTTGGCAATCCTGAAGCCAGTCGAGAGCAAGTAATTGCTGCTGCCAAAG
CAGCTAATGCAGACTTTTTCATCCAACAGTTGCCACAGGGATACGATACCAAGTTGGAAAATGCTGGAGAATCTCTCTCT
GTCGGCCAAGCTCAGCTCTTGACCATAGCCCGAGTCTTTCTGGCTATTCCAAAGATTCTTATCTTAGACGAGGCAACTTC
TTCCATTGATACACGGACAGAAGTGCTGGTACAGGATGCCTTTGCAAAACTCATGAAGGGCCGCACAAGCTTCATCATTG
CTCACCGTTTGTCAACCATTCAGGATGCGGATTTAATTCTTGTCTTAGTAGATGGTGATATTGTTGAATATGGTAACCAT
CAAGAACTCATGGATAGAAAGGGTAAGTATTACCAAATGCAAAAAGCTGCGGCTTTTAGTTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(24-295)

ABC transporter (ABC_tran)

(359-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.083

97.766

0.363