Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DLK06_RS17445 Genome accession   NZ_CP029610
Coordinates   3525258..3525662 (-) Length   134 a.a.
NCBI ID   WP_032057521.1    Uniprot ID   -
Organism   Acinetobacter pittii strain ST220     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3520258..3530662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLK06_RS17415 (DLK06_17435) - 3520342..3520611 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  DLK06_RS17420 (DLK06_17440) rapZ 3520608..3521459 (-) 852 WP_002117179.1 RNase adapter RapZ -
  DLK06_RS17425 (DLK06_17445) panC 3521483..3522331 (-) 849 WP_032057513.1 pantoate--beta-alanine ligase -
  DLK06_RS17430 (DLK06_17450) panB 3522335..3523144 (-) 810 WP_032057515.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  DLK06_RS17435 (DLK06_17455) folK 3523190..3523672 (-) 483 WP_032057517.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DLK06_RS17440 (DLK06_17460) pcnB 3523669..3525132 (-) 1464 WP_032057519.1 polynucleotide adenylyltransferase PcnB -
  DLK06_RS17445 (DLK06_17465) comEA 3525258..3525662 (-) 405 WP_032057521.1 ComEA family DNA-binding protein Machinery gene
  DLK06_RS17450 (DLK06_17470) mazG 3525631..3526437 (-) 807 WP_032057523.1 nucleoside triphosphate pyrophosphohydrolase -
  DLK06_RS17455 (DLK06_17475) - 3526550..3527323 (+) 774 WP_014208394.1 SDR family oxidoreductase -
  DLK06_RS17460 (DLK06_17480) relA 3527370..3529676 (-) 2307 WP_002117181.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15518.74 Da        Isoelectric Point: 10.5869

>NTDB_id=294198 DLK06_RS17445 WP_032057521.1 3525258..3525662(-) (comEA) [Acinetobacter pittii strain ST220]
MQLSMNLWKNKHNIFIVLFWSLISSTFIQAQSFDQNFKEWKTKQQRYDQKLSMQHSSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=294198 DLK06_RS17445 WP_032057521.1 3525258..3525662(-) (comEA) [Acinetobacter pittii strain ST220]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TATTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGACTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCATTCCTCTCATTCTAACAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCCGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396

Multiple sequence alignment