Detailed information NTG0029419

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: HAPS_RS10775
• Genome accession: NC_011852
• Coordinates: 2182227..2183570 (+)
• Length: 447 a.a.
• NCBI ID: WP_005710536.1
• Uniprot ID: B8F8J8
• Organism: Glaesserella parasuis SH0165
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2177227..2188570

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HAPS_RS10755 (HAPS_2213)	pntA	2177735..2179267 (-)	1533	WP_015940121.1	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	-
HAPS_RS10760 (HAPS_2215)	-	2179546..2180598 (+)	1053	WP_005710531.1	rod shape-determining protein	-
HAPS_RS10765 (HAPS_2216)	mreC	2180690..2181739 (+)	1050	WP_005710533.1	rod shape-determining protein MreC	-
HAPS_RS10770 (HAPS_2217)	mreD	2181739..2182227 (+)	489	WP_005710534.1	rod shape-determining protein MreD	-
HAPS_RS10775 (HAPS_2218)	rarA	2182227..2183570 (+)	1344	WP_005710536.1	replication-associated recombination protein A	Machinery gene
HAPS_RS10780 (HAPS_2219)	-	2183573..2185033 (-)	1461	WP_015940124.1	porin family protein	-
HAPS_RS10785 (HAPS_2220)	-	2185206..2185973 (+)	768	WP_041603201.1	energy transducer TonB	-
HAPS_RS10790 (HAPS_2221)	-	2185991..2186659 (+)	669	WP_010785999.1	MotA/TolQ/ExbB proton channel family protein	-
HAPS_RS10795 (HAPS_2222)	-	2186659..2187069 (+)	411	WP_021118698.1	ExbD/TolR family protein	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50111.00 Da
• Isoelectric Point: 6.3274

>NTDB_id=29419 HAPS_RS10775 WP_005710536.1 2182227..2183570(+) (rarA) [Glaesserella parasuis SH0165]
MNSLSFDFSADFRPLSARMRPRTLAEYVGQSHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIANELDAEVERL
SAVTSGIKEIREAIEKAKLNRQSGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRARIYI
LKPLQAVDILKILQNAIADKERGLGNEKLIIQDDVLQLLADYVNGDGRFSLNCLELMCDMAEQLPQGKLLDKALLTEVLG
ERQARFDKGGDRYYDLISALHKSIRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVALAAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYTAFKQAKRLAQEGKDYDVPEHLRNAPTSLMKSLGYGEEYRYAHDEPNAYAAG
ENYFPPELKDTQFYFPTERGMEKQIKEKMAWLKGLDLQSEVQRYNKQ

Nucleotide

• Length: 1344 bp

>NTDB_id=29419 HAPS_RS10775 WP_005710536.1 2182227..2183570(+) (rarA) [Glaesserella parasuis SH0165]
ATGAACAGCTTATCTTTCGATTTTTCTGCGGATTTTCGTCCCCTTTCCGCTCGAATGCGACCACGCACTCTAGCTGAATA
TGTCGGACAATCACACCTGATCGGCGAAGGCAAGCCTCTTCGCCGAGCCATTGAAGCAGGGCATAGCCACTCAATGATTT
TCTGGGGTCCCCCAGGAACAGGCAAAACCACCCTTGCTGAAATTATCGCAAATGAACTTGATGCCGAAGTTGAACGCCTA
TCAGCTGTTACTAGCGGTATCAAAGAGATCCGAGAAGCCATCGAAAAAGCCAAACTCAACCGACAATCTGGCAGACGCAC
GTTACTTTTTGTTGATGAAGTTCACCGTTTTAACAAAAGCCAACAAGATGCCTTTTTACCCCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCAACCACTGAAAATCCGTCCTTTGAACTGAATAACGCCTTGCTATCAAGGGCAAGGATTTACATT
CTCAAGCCACTACAAGCGGTCGATATTCTAAAAATTTTGCAAAATGCCATTGCAGATAAAGAGCGTGGACTAGGTAATGA
AAAACTCATCATTCAAGATGATGTGCTTCAACTGCTGGCGGATTATGTCAATGGTGACGGACGTTTTTCTCTCAACTGCC
TTGAATTAATGTGCGATATGGCAGAGCAATTACCACAAGGAAAATTACTGGATAAAGCCTTGCTCACCGAAGTGTTAGGC
GAACGCCAAGCCCGTTTTGACAAAGGTGGCGACCGCTATTACGACCTGATTTCCGCCTTACATAAATCCATTCGAGGCTC
TTCCCCTGACGGTGCATTGTACTGGTATGCTCGTATTTTAACCGCTGGAGGCGATCCACTGTATGTTGCTCGCCGACTAC
TTGCGATAGCCTCAGAAGATATAGGCAATGCCGACCCAAGGGCAATGCAAGTCGCCCTTGCAGCGTGGGATTGTTATACC
AGAGTAGGGGCTTACGAAGGCGAACGGGCTATCGCTCAAGCGGTGATTTACCTTGCCGTTGCCCCAAAAAGTAATGCCGT
TTACACCGCATTCAAACAAGCCAAACGCCTAGCTCAAGAAGGCAAGGATTACGATGTTCCCGAACATCTGCGAAACGCAC
CGACTAGCTTAATGAAATCCTTAGGCTACGGCGAAGAATACCGCTACGCCCACGACGAACCTAACGCCTACGCCGCAGGG
GAAAACTACTTCCCCCCTGAACTGAAAGACACCCAATTCTACTTCCCAACCGAACGTGGAATGGAAAAGCAGATCAAAGA
AAAAATGGCGTGGTTGAAAGGATTAGATTTGCAGAGTGAGGTGCAGAGGTATAACAAACAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (266-432)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (19-143)

• AAA C-terminal domain (AAA_assoc_2) (186-265)

3D structure

• AlphaFold DB: B8F8J8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.512	91.723	0.362