Detailed information NTG0294122

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: DL538_RS09070
• Genome accession: NZ_CP029609
• Coordinates: 1735984..1736763 (+)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain G7
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1730984..1741763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DL538_RS09050 (DL538_09030)	trmFO	1731677..1732984 (+)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
DL538_RS09055 (DL538_09035)	xerC	1733052..1733966 (+)	915	WP_003231988.1	tyrosine recombinase XerC	-
DL538_RS09060 (DL538_09040)	clpQ	1733979..1734524 (+)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
DL538_RS09065 (DL538_09045)	hslU	1734532..1735944 (+)	1413	WP_256683486.1	HslU--HslV peptidase ATPase subunit	-
DL538_RS09070 (DL538_09050)	codY	1735984..1736763 (+)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
DL538_RS09075 (DL538_09055)	flgB	1737143..1737532 (+)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
DL538_RS09080 (DL538_09060)	flgC	1737532..1737984 (+)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
DL538_RS09085 (DL538_09065)	fliE	1737995..1738315 (+)	321	WP_131228333.1	flagellar hook-basal body complex protein FliE	-
DL538_RS09090 (DL538_09070)	fliF	1738361..1739971 (+)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
DL538_RS09095 (DL538_09075)	fliG	1739984..1741000 (+)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
DL538_RS09100 (DL538_09080)	fliH	1740993..1741745 (+)	753	WP_003244804.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=294122 DL538_RS09070 WP_003220850.1 1735984..1736763(+) (codY) [Bacillus subtilis subsp. subtilis strain G7]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=294122 DL538_RS09070 WP_003220850.1 1735984..1736763(+) (codY) [Bacillus subtilis subsp. subtilis strain G7]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467