Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | DLD99_RS24545 | Genome accession | NZ_CP029608 |
| Coordinates | 5381315..5382187 (+) | Length | 290 a.a. |
| NCBI ID | WP_085712165.1 | Uniprot ID | - |
| Organism | Pseudomonas kribbensis strain 46-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5376315..5387187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLD99_RS24520 (DLD99_24515) | - | 5376601..5376897 (+) | 297 | WP_114885591.1 | DUF2845 domain-containing protein | - |
| DLD99_RS24525 (DLD99_24520) | - | 5377067..5377423 (-) | 357 | WP_065261581.1 | BON domain-containing protein | - |
| DLD99_RS24530 (DLD99_24525) | - | 5377723..5378166 (-) | 444 | WP_114885593.1 | pilin | - |
| DLD99_RS24535 (DLD99_24530) | pilB | 5378393..5380093 (+) | 1701 | WP_114885595.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DLD99_RS24540 (DLD99_24535) | pilC | 5380096..5381313 (+) | 1218 | WP_114885597.1 | type II secretion system F family protein | Machinery gene |
| DLD99_RS24545 (DLD99_24540) | pilD | 5381315..5382187 (+) | 873 | WP_085712165.1 | A24 family peptidase | Machinery gene |
| DLD99_RS24550 (DLD99_24545) | coaE | 5382184..5382807 (+) | 624 | WP_114885599.1 | dephospho-CoA kinase | - |
| DLD99_RS24555 (DLD99_24550) | yacG | 5382804..5383004 (+) | 201 | WP_085712167.1 | DNA gyrase inhibitor YacG | - |
| DLD99_RS24560 (DLD99_24555) | - | 5383010..5383225 (-) | 216 | WP_096820888.1 | hypothetical protein | - |
| DLD99_RS24565 (DLD99_24560) | - | 5383291..5383980 (-) | 690 | WP_085712168.1 | energy-coupling factor ABC transporter permease | - |
| DLD99_RS24570 (DLD99_24565) | - | 5384114..5384740 (+) | 627 | WP_065261573.1 | DUF1780 domain-containing protein | - |
| DLD99_RS24575 (DLD99_24570) | - | 5384885..5385058 (+) | 174 | WP_065261571.1 | DUF3094 domain-containing protein | - |
| DLD99_RS24580 (DLD99_24575) | - | 5385125..5386423 (+) | 1299 | WP_085712169.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| DLD99_RS24585 (DLD99_24580) | - | 5386636..5387043 (+) | 408 | WP_114885602.1 | EF-hand domain-containing protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32340.74 Da Isoelectric Point: 7.9937
>NTDB_id=294075 DLD99_RS24545 WP_085712165.1 5381315..5382187(+) (pilD) [Pseudomonas kribbensis strain 46-2]
MSIDELFALYPLAFVFTALILGLVVGSFLNVVIWRLPKMLEREWRQQAHDVLGLPVETPLPVYNLMLPHSQCPHCAHRIR
AWENIPLLSYLFLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDAMWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDRKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MSIDELFALYPLAFVFTALILGLVVGSFLNVVIWRLPKMLEREWRQQAHDVLGLPVETPLPVYNLMLPHSQCPHCAHRIR
AWENIPLLSYLFLRGRCSSCAAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDAMWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDRKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=294075 DLD99_RS24545 WP_085712165.1 5381315..5382187(+) (pilD) [Pseudomonas kribbensis strain 46-2]
ATGTCCATCGACGAACTCTTCGCCCTCTATCCGCTGGCCTTTGTCTTCACTGCTCTGATACTCGGGCTGGTGGTGGGCAG
CTTCCTCAATGTGGTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCCCACGACGTGCTCGGGC
TGCCCGTCGAAACGCCGTTGCCGGTCTACAACCTGATGTTGCCGCACTCGCAATGCCCGCATTGCGCTCACCGCATTCGT
GCGTGGGAAAACATCCCGCTGCTCAGCTACCTGTTTTTGCGCGGGCGCTGCTCGTCATGCGCGGCGCCGATCAGCAAGCG
TTATCCACTGACCGAACTGGCCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCACCTGGGCTTCGGCTGGCCGGCATGCC
TGCTGATCGTGCTGACCTGGGGCTTGCTGGCGATGAGCCTGATCGACACCGAGCATCAGCTGTTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGCCTGTTCGTCTCGCTGCACGATGCGATGTGGGGCGCGGT
GGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGCATCGGTCACGGCGACT
TCAAGCTGCTGGCACTGCTGGGGGCCTGGGGAGGCTGGCAGATTCTGCCGCTGACCATTCTCCTGTCGTCGCTGGTGGGG
GCCGTACTGGGGGTGATTCTGCTCAAGCTGCGCGACCGGAAAACCTCGACGCCAATCCCCTTCGGGCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGTCCATCGACGAACTCTTCGCCCTCTATCCGCTGGCCTTTGTCTTCACTGCTCTGATACTCGGGCTGGTGGTGGGCAG
CTTCCTCAATGTGGTGATCTGGCGCCTGCCGAAAATGCTCGAGCGCGAATGGCGCCAGCAGGCCCACGACGTGCTCGGGC
TGCCCGTCGAAACGCCGTTGCCGGTCTACAACCTGATGTTGCCGCACTCGCAATGCCCGCATTGCGCTCACCGCATTCGT
GCGTGGGAAAACATCCCGCTGCTCAGCTACCTGTTTTTGCGCGGGCGCTGCTCGTCATGCGCGGCGCCGATCAGCAAGCG
TTATCCACTGACCGAACTGGCCTGCGGCCTGCTCTCGGCGTTCATCGCCTGGCACCTGGGCTTCGGCTGGCCGGCATGCC
TGCTGATCGTGCTGACCTGGGGCTTGCTGGCGATGAGCCTGATCGACACCGAGCATCAGCTGTTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGTTGATCGTCAACAGCTTCGGCCTGTTCGTCTCGCTGCACGATGCGATGTGGGGCGCGGT
GGCCGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTCACCGGCAAGGACGGCATCGGTCACGGCGACT
TCAAGCTGCTGGCACTGCTGGGGGCCTGGGGAGGCTGGCAGATTCTGCCGCTGACCATTCTCCTGTCGTCGCTGGTGGGG
GCCGTACTGGGGGTGATTCTGCTCAAGCTGCGCGACCGGAAAACCTCGACGCCAATCCCCTTCGGGCCCTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.61 |
97.241 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
52.482 |
97.241 |
0.51 |
| pilD | Acinetobacter baumannii D1279779 |
47.887 |
97.931 |
0.469 |
| pilD | Acinetobacter nosocomialis M2 |
47.887 |
97.931 |
0.469 |
| pilD | Neisseria gonorrhoeae MS11 |
48.889 |
93.103 |
0.455 |