Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AM1_RS06200 Genome accession   NC_009925
Coordinates   1375383..1376471 (+) Length   362 a.a.
NCBI ID   WP_010476352.1    Uniprot ID   -
Organism   Acaryochloris marina MBIC11017     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370383..1381471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM1_RS06180 (AM1_1391) - 1371135..1371521 (+) 387 WP_012161954.1 nuclear transport factor 2 family protein -
  AM1_RS06185 (AM1_1392) - 1371978..1372958 (+) 981 WP_083776701.1 leucine-rich repeat domain-containing protein -
  AM1_RS06190 (AM1_1393) - 1373009..1373620 (-) 612 WP_238549179.1 hypothetical protein -
  AM1_RS06195 (AM1_1394) fumC 1373675..1375069 (-) 1395 WP_012161957.1 class II fumarate hydratase -
  AM1_RS06200 (AM1_1395) pilM 1375383..1376471 (+) 1089 WP_010476352.1 type IV pilus assembly protein PilM Machinery gene
  AM1_RS06205 (AM1_1396) - 1376476..1377228 (+) 753 WP_012161959.1 PilN domain-containing protein -
  AM1_RS06210 (AM1_1397) - 1377225..1377944 (+) 720 WP_012161960.1 pilus assembly protein PilO -
  AM1_RS06215 (AM1_1398) - 1378106..1380091 (+) 1986 WP_238549180.1 AMIN domain-containing protein -
  AM1_RS06220 (AM1_1399) rpe 1380175..1380882 (-) 708 WP_012161962.1 ribulose-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39407.00 Da        Isoelectric Point: 4.1976

>NTDB_id=29402 AM1_RS06200 WP_010476352.1 1375383..1376471(+) (pilM) [Acaryochloris marina MBIC11017]
MVTSLKSLFSNSNQGVGVELTPDSVNIVQLKQQKQGTNLNTFAAIPIPEGAFQDGRITDPDAIADALRQGITEHKIKAKA
AICAVPIGEAVIRLIRLPAELDEMELRDMVLNQEAAIYLPFPREEADVDFQRLGTDIDEDGIERVEVLLVATPKDITENY
LNVFQQAGLDLKVLEVSSFSLIRTLRNQLLQFMEGEAVALVNIDFDGTEISIVMDGIPQFNRKVPIGTHHLQNALSRAMN
LPGAMGADLLQGMTVPLDVTDNTANNPSSAAILRMLSDLSDELRRSIDFYLNQGENLDITQVFVSGPGASLGQIDEFLTQ
RLGLTTTLVDPISSLGIQNSDSIPMAQRPALSVVMGLGMREV

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=29402 AM1_RS06200 WP_010476352.1 1375383..1376471(+) (pilM) [Acaryochloris marina MBIC11017]
GTGGTGACTTCATTAAAAAGTCTGTTTTCGAATTCGAATCAGGGGGTAGGCGTAGAGTTAACCCCAGACAGCGTGAATAT
CGTTCAACTTAAGCAACAAAAGCAGGGGACAAACCTCAATACTTTTGCGGCAATTCCTATTCCGGAAGGTGCTTTTCAAG
ATGGACGGATTACAGATCCAGACGCCATTGCCGATGCCCTTCGTCAAGGAATTACAGAACATAAAATCAAAGCCAAAGCT
GCCATATGCGCCGTTCCCATTGGTGAAGCTGTCATTCGGTTGATTCGTTTACCGGCCGAACTGGACGAAATGGAACTGCG
GGATATGGTTCTTAATCAAGAAGCAGCCATATATTTGCCCTTTCCTCGGGAAGAAGCAGATGTTGACTTTCAACGGTTAG
GAACAGACATCGATGAGGATGGCATTGAACGAGTCGAAGTACTTCTCGTTGCCACGCCAAAAGACATTACTGAAAATTAC
CTCAATGTTTTCCAACAGGCAGGTCTAGATCTGAAGGTTCTAGAAGTCAGTAGTTTTTCCTTAATCAGAACGCTGCGAAA
TCAACTCCTCCAATTTATGGAAGGAGAAGCAGTGGCACTGGTGAATATAGATTTTGATGGTACTGAAATTAGTATCGTCA
TGGATGGTATTCCTCAATTTAATCGTAAGGTCCCCATTGGCACTCATCATCTTCAAAATGCGTTGAGTCGGGCGATGAAC
CTGCCTGGCGCAATGGGGGCAGATTTATTGCAAGGGATGACCGTTCCTTTAGATGTAACGGACAACACCGCCAATAATCC
CAGCTCTGCTGCCATCCTGAGAATGTTAAGCGATTTATCGGATGAACTTCGCCGTTCCATCGACTTCTACTTAAACCAGG
GTGAAAATTTAGATATTACGCAAGTCTTTGTATCAGGACCAGGTGCCAGTTTAGGACAAATTGATGAGTTTTTAACCCAG
CGTTTAGGACTGACAACAACATTAGTCGATCCAATTAGCTCGCTCGGCATTCAAAATTCAGACAGTATTCCGATGGCTCA
ACGTCCTGCCTTAAGTGTTGTTATGGGTCTTGGGATGCGGGAGGTATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(17-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

51.913

100

0.525

Multiple sequence alignment