Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DLJ52_RS05525 Genome accession   NZ_CP029559
Coordinates   1126616..1128364 (-) Length   582 a.a.
NCBI ID   WP_109982607.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1121616..1133364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS05495 (DLJ52_05495) - 1121727..1122344 (-) 618 WP_002962495.1 GTP pyrophosphokinase family protein -
  DLJ52_RS05500 (DLJ52_05500) - 1122498..1122902 (-) 405 WP_002962497.1 GFA family protein -
  DLJ52_RS05505 (DLJ52_05505) - 1123331..1123960 (-) 630 WP_002959413.1 ABC transporter permease -
  DLJ52_RS05510 (DLJ52_05510) - 1123963..1124712 (-) 750 WP_019770237.1 ABC transporter ATP-binding protein -
  DLJ52_RS05515 (DLJ52_05515) - 1124719..1125633 (-) 915 WP_002959417.1 glycine betaine ABC transporter substrate-binding protein -
  DLJ52_RS05520 (DLJ52_05520) - 1125623..1126258 (-) 636 WP_002959419.1 ABC transporter permease -
  DLJ52_RS05525 (DLJ52_05525) rcrQ 1126616..1128364 (-) 1749 WP_109982607.1 ABC transporter ATP-binding protein Regulator
  DLJ52_RS05530 (DLJ52_05530) rcrP 1128354..1130183 (-) 1830 WP_109982608.1 ABC transporter ATP-binding protein Regulator
  DLJ52_RS05535 (DLJ52_05535) rcrR 1130191..1130619 (-) 429 WP_002959424.1 MarR family transcriptional regulator Regulator
  DLJ52_RS05540 (DLJ52_05540) - 1130841..1132937 (+) 2097 WP_109982609.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64475.86 Da        Isoelectric Point: 8.5412

>NTDB_id=293523 DLJ52_RS05525 WP_109982607.1 1126616..1128364(-) (rcrQ) [Streptococcus sobrinus strain NIDR 6715-15]
MKTKKKSLLSQMSPYLKGYRALFGLAVVFSIISSTITVIGPDKLKEMTDTMTKGLAGNIDLDKIGSIAMTLALLYIGGAL
VSYAASFIVSTLIQRFSQRLRNAIADKINKVPLKYFDSHAQGDTLSRVTNDVDLMTQSFNQSLVTMVASIVLLIGSIFMM
IKTNGLLAATAIGSVFAGFLLTGLIMSRSQPLFKKQQKNLADVSGYVEEIYSGHNVVTSYNARRESKEAFEKLNQDLFSS
MWKSQFFSGIMMPMMQFIGNFGYVMVCIVGARMAINGDITMGTIVAFMTYVRIFTQPISQIAQGITQLQSANAAMGRVFE
FLDEEEMEVEDVKAKQLDKVKGDVAFENVFFGYNPDKTIIHDFSAKAKPGQKIAIVGPTGAGKTTMVNLLMRFYEINKGR
ISIDGVNIHDMKRSEVHDAFSMVLQDTWLFEGTVKENLIFNQEHITDKQVLAATKAVGVHHYIKTLPKGYDTVLDDSVTL
SVGQKQLMTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGN
HQELMTQNGFYADLYNSQFASA

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=293523 DLJ52_RS05525 WP_109982607.1 1126616..1128364(-) (rcrQ) [Streptococcus sobrinus strain NIDR 6715-15]
ATGAAGACTAAAAAGAAATCATTACTTAGCCAAATGTCTCCTTATTTGAAGGGATATCGGGCACTGTTTGGACTGGCTGT
TGTCTTTTCTATCATTTCCAGCACTATTACCGTTATCGGACCGGATAAGCTCAAGGAAATGACGGATACCATGACCAAGG
GGCTGGCTGGTAATATTGACTTAGATAAGATTGGCTCCATCGCCATGACCTTGGCTCTCCTCTATATCGGTGGGGCTCTG
GTCTCCTATGCGGCCAGCTTTATCGTCTCAACCCTGATTCAACGCTTTTCACAACGATTGCGTAATGCCATTGCTGACAA
GATTAACAAGGTTCCCCTCAAGTATTTCGATAGTCACGCCCAAGGGGACACCCTCTCAAGGGTAACCAATGACGTCGACC
TCATGACCCAGTCCTTTAACCAAAGTCTGGTGACTATGGTGGCTTCCATTGTGCTCCTAATTGGTTCAATCTTTATGATG
ATTAAGACCAATGGCCTTTTGGCCGCAACAGCTATCGGCTCAGTCTTCGCTGGTTTCCTCCTGACAGGTCTGATTATGTC
TCGCAGTCAACCGCTTTTCAAAAAGCAACAAAAGAACTTGGCTGACGTCTCTGGTTATGTCGAAGAAATTTATAGCGGAC
ACAATGTTGTTACCAGCTATAATGCCCGTCGAGAAAGTAAAGAAGCCTTTGAAAAACTGAATCAAGACCTCTTCTCAAGT
ATGTGGAAGTCTCAGTTCTTCTCAGGAATCATGATGCCCATGATGCAGTTCATCGGTAACTTCGGTTATGTCATGGTCTG
TATCGTTGGGGCCCGCATGGCCATCAATGGTGACATCACCATGGGGACCATCGTCGCCTTCATGACCTATGTCCGTATTT
TTACCCAACCGATTTCGCAAATCGCTCAAGGGATTACCCAACTCCAATCAGCCAATGCTGCTATGGGACGGGTCTTTGAA
TTCCTGGACGAAGAAGAAATGGAAGTGGAAGATGTTAAGGCTAAGCAATTGGATAAGGTCAAGGGGGATGTCGCCTTTGA
AAATGTCTTCTTTGGCTACAATCCAGACAAGACCATTATCCATGACTTCTCAGCCAAGGCTAAGCCTGGTCAAAAGATTG
CCATTGTCGGACCAACCGGTGCTGGTAAGACGACCATGGTTAACCTGCTCATGCGTTTCTATGAAATCAATAAGGGACGA
ATTTCTATCGACGGCGTTAATATCCATGATATGAAACGCTCAGAAGTACACGATGCCTTTTCTATGGTTCTCCAAGACAC
CTGGCTCTTTGAAGGAACTGTCAAGGAAAACCTGATTTTCAACCAAGAACATATTACTGATAAACAGGTTCTGGCTGCCA
CCAAGGCGGTCGGTGTCCACCACTACATCAAGACCCTGCCTAAGGGCTATGACACTGTTCTGGATGATTCGGTCACCCTA
TCGGTCGGTCAAAAGCAATTGATGACCATCGCTCGGGCCCTGCTCAAGGACTCACCGCTCCTGATTTTGGACGAAGCAAC
CTCATCTGTTGATACCCGAACCGAAGAATTGATTCAAAAGGCCATGGACAAGCTGATGGAAGGTCGGACCTCCTTCGTGA
TTGCCCACCGTCTATCAACCATCCGCAACGCTGATCTGATTCTAGTCATGAAAGATGGTAATATCATCGAACAAGGTAAC
CACCAAGAATTGATGACGCAAAATGGCTTCTATGCCGACCTCTACAATTCTCAATTCGCCTCAGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(24-297)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

86.356

99.485

0.859

Multiple sequence alignment