Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   EQJ08_RS06120 Genome accession   NZ_CP035167
Coordinates   1191773..1192690 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM104008     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1186773..1197690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS06105 (EQJ08_06105) trpS 1187353..1188345 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  EQJ08_RS06110 (EQJ08_06110) oppA 1189089..1190726 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  EQJ08_RS06115 (EQJ08_06115) oppB 1190834..1191769 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  EQJ08_RS06120 (EQJ08_06120) amiD 1191773..1192690 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  EQJ08_RS06125 (EQJ08_06125) oppD 1192695..1193771 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  EQJ08_RS06130 (EQJ08_06130) oppF 1193773..1194690 (+) 918 WP_128441510.1 oligopeptide ABC transporter ATP-binding protein OppF -
  EQJ08_RS06135 (EQJ08_06135) yjbB 1194796..1196013 (+) 1218 WP_128441512.1 MFS transporter -
  EQJ08_RS06140 (EQJ08_06140) yjbC 1196178..1196756 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  EQJ08_RS06145 (EQJ08_06145) spx 1196937..1197332 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=293439 EQJ08_RS06120 WP_003232954.1 1191773..1192690(+) (amiD) [Bacillus subtilis strain SRCM104008]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=293439 EQJ08_RS06120 WP_003232954.1 1191773..1192690(+) (amiD) [Bacillus subtilis strain SRCM104008]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGTATCTCAAT
CTTTATCGGTGTTGCAGCTGCCGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCCGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364