Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DKM44_RS05445 Genome accession   NZ_CP029494
Coordinates   1075675..1076271 (-) Length   198 a.a.
NCBI ID   WP_109826024.1    Uniprot ID   -
Organism   Deinococcus irradiatisoli strain 17bor-2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1070675..1081271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKM44_RS05420 (DKM44_05420) - 1070740..1072653 (+) 1914 WP_109828217.1 ABC transporter ATP-binding protein -
  DKM44_RS05425 (DKM44_05425) - 1072650..1074536 (+) 1887 WP_109826021.1 ABC transporter ATP-binding protein -
  DKM44_RS05430 (DKM44_05430) - 1074605..1074937 (-) 333 WP_109826022.1 roadblock/LC7 domain-containing protein -
  DKM44_RS05435 (DKM44_05435) - 1074927..1075274 (-) 348 WP_245896053.1 roadblock/LC7 domain-containing protein -
  DKM44_RS05440 (DKM44_05440) - 1075271..1075618 (-) 348 WP_109826023.1 roadblock/LC7 domain-containing protein -
  DKM44_RS05445 (DKM44_05445) recR 1075675..1076271 (-) 597 WP_109826024.1 recombination mediator RecR Machinery gene
  DKM44_RS05450 (DKM44_05450) - 1076268..1076564 (-) 297 WP_109826025.1 YbaB/EbfC family nucleoid-associated protein -
  DKM44_RS05455 (DKM44_05455) - 1076713..1077432 (-) 720 WP_109826026.1 hypothetical protein -
  DKM44_RS05460 (DKM44_05460) pckA 1077634..1079262 (-) 1629 WP_109826027.1 phosphoenolpyruvate carboxykinase (ATP) -
  DKM44_RS05465 (DKM44_05465) - 1079558..1080004 (+) 447 WP_109826028.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21505.98 Da        Isoelectric Point: 5.6801

>NTDB_id=293275 DKM44_RS05445 WP_109826024.1 1075675..1076271(-) (recR) [Deinococcus irradiatisoli strain 17bor-2]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFYLFEQPREDIERLAGVLLDAKRELHTCPVCFNITDAELCDVCADPSRQQN
LICVVEEPGDVIAIEKSGEYSGLYHVLHGVISPMNGVGPDKLHLKALLPRLTPGMEVILATGTTVEGEATAMYLQRLIEP
LGATVSRIAYGLPVGGALEYADEVTLGRALSGRQRITK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=293275 DKM44_RS05445 WP_109826024.1 1075675..1076271(-) (recR) [Deinococcus irradiatisoli strain 17bor-2]
CTGAAATACCCTCCCAGTCTGGTGGCCCTGATCCGCGAACTCTCGCGCCTGCCGGGCATCGGCCCCAAGAGTGCCCAGCG
CCTGGCCTTCTACCTCTTCGAGCAGCCACGTGAGGACATCGAGCGCCTCGCGGGCGTGCTGCTCGACGCCAAGCGCGAAC
TGCACACCTGCCCGGTGTGTTTCAACATCACCGACGCCGAGCTGTGCGACGTGTGCGCCGACCCTTCACGCCAGCAGAAC
CTGATCTGCGTGGTCGAGGAGCCCGGCGACGTGATCGCCATCGAAAAGAGCGGCGAGTACAGCGGCCTGTATCACGTGTT
GCACGGCGTCATCAGCCCGATGAACGGCGTGGGGCCCGACAAGCTGCACCTCAAGGCGCTGCTGCCGCGCCTGACCCCCG
GCATGGAAGTCATTCTCGCCACCGGCACCACCGTCGAGGGCGAGGCCACCGCCATGTATTTGCAGCGCCTGATCGAGCCG
CTGGGCGCGACGGTGTCTCGCATCGCCTACGGTCTGCCGGTCGGCGGAGCGCTGGAATACGCCGACGAGGTCACGCTGGG
CCGGGCGCTGAGCGGACGCCAGCGCATCACCAAATGA

Domains

Predicted by InterproScan.

RecR protein (RecR_ZnF)

(40-77)

Toprim domain (Toprim_4)

(81-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

83.333

100

0.833

Multiple sequence alignment