Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   EQI56_RS08040 Genome accession   NZ_CP035165
Coordinates   1529368..1529817 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM103881     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524368..1534817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI56_RS08000 (EQI56_08000) ctaE 1524385..1525008 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  EQI56_RS08005 (EQI56_08005) ctaF 1525011..1525343 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  EQI56_RS08010 (EQI56_08010) ctaG 1525370..1526263 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  EQI56_RS08015 (EQI56_08015) ylbA 1526295..1526657 (-) 363 WP_003232238.1 YugN family protein -
  EQI56_RS08020 (EQI56_08020) ylbB 1526797..1527243 (+) 447 WP_003221362.1 CBS domain-containing protein -
  EQI56_RS08025 (EQI56_08025) ylbC 1527327..1528367 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  EQI56_RS08030 (EQI56_08030) ylbD 1528599..1528997 (+) 399 WP_003232233.1 YlbD family protein -
  EQI56_RS08035 (EQI56_08035) ylbE 1529013..1529252 (+) 240 WP_003232231.1 YlbE-like family protein -
  EQI56_RS08040 (EQI56_08040) ylbF 1529368..1529817 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  EQI56_RS08045 (EQI56_08045) ylbG 1529872..1530144 (+) 273 WP_009967171.1 YlbG family protein -
  EQI56_RS08050 (EQI56_08050) rsmD 1530467..1531021 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EQI56_RS08055 (EQI56_08055) coaD 1531026..1531511 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  EQI56_RS08060 (EQI56_08060) spoVV 1531522..1532748 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  EQI56_RS08065 (EQI56_08065) ylbK 1532929..1533711 (+) 783 WP_021479345.1 patatin family protein -
  EQI56_RS08070 (EQI56_08070) sepM 1533713..1534738 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=293149 EQI56_RS08040 WP_003221370.1 1529368..1529817(+) (ylbF) [Bacillus subtilis strain SRCM103881]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=293149 EQI56_RS08040 WP_003221370.1 1529368..1529817(+) (ylbF) [Bacillus subtilis strain SRCM103881]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment