Detailed information NTG0029290

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: BPUM_RS11900
• Genome accession: NC_009848
• Coordinates: 2396852..2399236 (-)
• Length: 794 a.a.
• NCBI ID: WP_012010723.1
• Uniprot ID: A8FFN8
• Organism: Bacillus pumilus SAFR-032
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2391852..2404236

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BPUM_RS11870 (BPUM_2382)	-	2392729..2393457 (+)	729	WP_012010718.1	amino acid ABC transporter ATP-binding protein	-
BPUM_RS11875 (BPUM_2383)	-	2393471..2394280 (+)	810	WP_012010719.1	transporter substrate-binding domain-containing protein	-
BPUM_RS11880 (BPUM_2384)	-	2394348..2395001 (+)	654	WP_012010720.1	amino acid ABC transporter permease	-
BPUM_RS11885 (BPUM_2385)	-	2395017..2395667 (+)	651	WP_012010721.1	amino acid ABC transporter permease	-
BPUM_RS18860 (BPUM_2386)	-	2395901..2396032 (-)	132	WP_003216198.1	YrzQ family protein	-
BPUM_RS11890 (BPUM_2387)	-	2396053..2396244 (-)	192	WP_003216308.1	hypothetical protein	-
BPUM_RS11895 (BPUM_2388)	-	2396258..2396716 (-)	459	WP_041816296.1	PRC-barrel domain-containing protein	-
BPUM_RS11900 (BPUM_2389)	recD2	2396852..2399236 (-)	2385	WP_012010723.1	ATP-dependent RecD-like DNA helicase	Machinery gene
BPUM_RS11905 (BPUM_2390)	-	2399256..2399909 (-)	654	WP_012010724.1	tetratricopeptide repeat protein	-
BPUM_RS11910 (BPUM_2391)	mnmA	2399970..2401088 (-)	1119	WP_003216305.1	tRNA 2-thiouridine(34) synthase MnmA	-
BPUM_RS11915 (BPUM_2392)	-	2401184..2402326 (-)	1143	WP_012010725.1	cysteine desulfurase family protein	-
BPUM_RS11920 (BPUM_2393)	cymR	2402345..2402764 (-)	420	WP_012010726.1	cysteine metabolism transcriptional regulator CymR	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 88966.47 Da
• Isoelectric Point: 5.1611

>NTDB_id=29290 BPUM_RS11900 WP_012010723.1 2396852..2399236(-) (recD2) [Bacillus pumilus SAFR-032]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGKLGSETLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGSDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVADQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDDEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLVQTEEIMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=29290 BPUM_RS11900 WP_012010723.1 2396852..2399236(-) (recD2) [Bacillus pumilus SAFR-032]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAGAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAGGAAACTTACACCTTCTATGGCAAAGTCACGAGCCATCCGAAGTTTGGTGAA
CAGTTTCAGGCGACTCATTTTCAAAAGGAAGTACCGACAACAAAACAAGGAATAATCCATTATCTTTCAAGTGATTTATT
TGAGGGGATAGGCAAAAAGACAGCGGAAGAAATTGTAGGAAAGCTTGGCAGTGAGACGCTTCATAAAATTATGCGTGACC
CAGCGGTTTTGTATGACGTTCCGCGCTTATCAAAAAAGAAGGCTGATAAGCTGGCCGCAGCGCTCCAGGAGCATCAAGGA
TTGGAACAAATCATGATCAGCTTGAATCAATACGGCTTTGGTCCGCAGCTCAGCATGAAGATTTATCAAGTGTACGAAAG
TGAGACGCTGCAGAAGATTGAAGAAAACCCGTATCAGCTCGTCAAGGATGTTGAAGGGATCGGATTTATTAAGGCAGATG
AACTTGGCGCTAGAACCGGCATCTCAGGAAGTGACCCAGAGCGAATCCGTGCAGCCTTGCTTTATACAGTGGAGACAGCC
AGTCTTCAGGACGGTCATACGTACATACAAACAAAGGATTTGATCGTCGAAACCCGAAAACTGCTCAATCAAACAGGCAA
TGAGTACAAAGTGACGGAAATGGACGTCGCCGATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGGTGCTATCATCCGTCCTTATTTTATGCCGAGCAAAGTGTCGCGAAACGTATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTCCTTCTAGCCCTTGGTGAGCTAGAGGAACGGCTGGGCGTCCAATATGCGCC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCAATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAGACAA
CAGTCATTAAAGGGATTGTTGAGCTTTACAGCGATCTTCATGGTGTATCACTGGACCCAAGTGATTATAAAAAAGATGAA
TCCTTCCCATTTGTGCTTGCGGCACCAACTGGGCGAGCAGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTGAC
GATTCATCGGCTGCTTGGTTGGAACGGATCAGAGGGATTTTCTCATGATGATGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTAGATATTTGGCTTGCGAATCATTTGTTTAAAGCCATTCCTGACCATATACAAGTGATC
ATGGTGGGGGATGAACATCAACTTCCGTCTGTCGGACCAGGCCAAGTGTTAAGAGACTTGCTTGCATCACAAGCCGTGCC
AGCGGTTACCCTAACCGATATTTACCGGCAGGCAGACGGCTCCAGCATTGTTGAACTTGCACATGATATGAAAAATGGTG
TCCTGCCAAAGGATATTACCGCACGTTCAAAGGATCGATCTTTCATCAAATGCTCAGCAGATCAAATGAAAGAAGTGATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCTAAAGATATTCAAGTGCTTGCGCCCATGTACAAAGGAAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTTGAATCCTAAAAAACCAAAAGGCCGAGAAATTCCTTTTG
GTGATGTGGTGTACCGGACTGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCAGAGAACAATATTTTTAACGGTGATATT
GGCGAAATTGTCTCAATTTTTTATGCGAAAGAAAACACAGAAAAAGAAGATATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACTTTTACTAAAAAGGATTTTCATCAATTTACACATGCCTATTGTTGCTCTATCCACAAATCACAAGGCAGTGAAT
TCCCCATCGTTGTACTGCCAGTCGTGAGAAGTTACTACAGAATGCTTCGGCGAAATTTGCTGTACACAGCCATTACACGA
AGTAAAAAGTTTTTAATCCTGTGCGGCGAGGAATCAGCACTCGAGTGGGGCGTGAAAAACAATGAGGATTCCCTCAGACA
AACGTCCTTAACGATGCGGCTCGTGCAAACCGAAGAGATTATGGATGCGGAGCTTGCAGCACTTCAAAAAGAACTGCCGT
TTAGCGTGCATGATGCAAATATCGGTATGGAGGGAATCACTCCATTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• AAA domain (AAA_30) (345-553)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

3D structure

• AlphaFold DB: A8FFN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80.025	100	0.802