Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BPUM_RS07640 Genome accession   NC_009848
Coordinates   1570724..1571503 (+) Length   259 a.a.
NCBI ID   WP_012009951.1    Uniprot ID   A8FD81
Organism   Bacillus pumilus SAFR-032     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565724..1576503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS07620 (BPUM_1511) trmFO 1566428..1567732 (+) 1305 WP_012009948.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BPUM_RS07625 (BPUM_1512) xerC 1567795..1568712 (+) 918 WP_012009949.1 tyrosine recombinase XerC -
  BPUM_RS07630 (BPUM_1513) hslV 1568727..1569272 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  BPUM_RS07635 (BPUM_1514) hslU 1569289..1570689 (+) 1401 WP_012009950.1 HslU--HslV peptidase ATPase subunit -
  BPUM_RS07640 (BPUM_1515) codY 1570724..1571503 (+) 780 WP_012009951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BPUM_RS07645 (BPUM_1516) flgB 1571790..1572179 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  BPUM_RS07650 (BPUM_1517) flgC 1572179..1572631 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  BPUM_RS07655 (BPUM_1518) fliE 1572643..1572960 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  BPUM_RS07660 (BPUM_1519) fliF 1573010..1574602 (+) 1593 WP_012009954.1 flagellar basal-body MS-ring/collar protein FliF -
  BPUM_RS07665 (BPUM_1520) fliG 1574614..1575630 (+) 1017 WP_012009955.1 flagellar motor switch protein FliG -
  BPUM_RS07670 (BPUM_1521) fliH 1575623..1576387 (+) 765 WP_012009956.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29044.31 Da        Isoelectric Point: 4.6614

>NTDB_id=29278 BPUM_RS07640 WP_012009951.1 1570724..1571503(+) (codY) [Bacillus pumilus SAFR-032]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=29278 BPUM_RS07640 WP_012009951.1 1570724..1571503(+) (codY) [Bacillus pumilus SAFR-032]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACGATTGTGCCAATTATCGGAGGAGGAGATCGTTTAGGAACGTTAATTCTGTCTCGTTTGCAAGATA
CATTTAAAGACGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAAATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCAATTAGTTCTCTATCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCACGCTCTCTTGGAATGAAGGGAACA
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FD81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.753

100

0.958
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment