Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DKG76_RS14535 Genome accession   NZ_CP029465
Coordinates   2910698..2913058 (-) Length   786 a.a.
NCBI ID   WP_003237510.1    Uniprot ID   A0A9W5LKA6
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2905698..2918058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS14515 (DKG76_14515) - 2905773..2907326 (+) 1554 WP_003237502.1 SH3 domain-containing protein -
  DKG76_RS14520 (DKG76_14520) dtd 2907353..2907793 (-) 441 WP_003237504.1 D-aminoacyl-tRNA deacylase -
  DKG76_RS14525 (DKG76_14525) relA 2907806..2910010 (-) 2205 WP_003237506.1 GTP diphosphokinase -
  DKG76_RS14530 (DKG76_14530) - 2910180..2910692 (-) 513 WP_003237508.1 adenine phosphoribosyltransferase -
  DKG76_RS14535 (DKG76_14535) recJ 2910698..2913058 (-) 2361 WP_003237510.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DKG76_RS14540 (DKG76_14540) - 2913125..2913448 (-) 324 WP_003237512.1 lipopolysaccharide assembly LapA domain-containing protein -
  DKG76_RS14545 (DKG76_14545) - 2913525..2914022 (-) 498 WP_003237514.1 cation:proton antiporter regulatory subunit -
  DKG76_RS14550 (DKG76_14550) secDF 2914176..2916389 (-) 2214 WP_003237516.1 protein translocase subunit SecDF -
  DKG76_RS14555 (DKG76_14555) comN 2916428..2916724 (-) 297 WP_003237518.1 post-transcriptional regulator ComN -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88225.82 Da        Isoelectric Point: 5.0102

>NTDB_id=292750 DKG76_RS14535 WP_003237510.1 2910698..2913058(-) (recJ) [Bacillus inaquosorum strain KCTC 13429]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESAKLFLHTKDADFYDPFEMKGMKEAAERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
ELDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTTRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPGLRNRLNEIANNTLTEEDFIPVQEVDLVCDVEDITVESITEMNQLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQLDCVGFNKGELEEGIVPGTRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSALPSAKRAIVSFKEDSTTLLQTEDLRREVHVISSVDQAKAFDLDGAYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNHEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGVKKRDLTDSQTYQEKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=292750 DKG76_RS14535 WP_003237510.1 2910698..2913058(-) (recJ) [Bacillus inaquosorum strain KCTC 13429]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCAAAGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGACCCTTTTGAAATGAAGGGCATGAAAGAAGCGGCAGAGCGTATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACACTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGATATGGCCCTAATGAACAGGCGTTCCGTTCGATTA
AAGAACGGGGCTTCTCTCTGATTATTACGGTTGATACAGGAATTGCCGCCGTGCATGAAGCAAAGGTGGCAAAGGAACTC
GAACTTGATGTCATCATTACCGATCACCATGAGCCGGGACCGGAGCTCCCGGATGTTCACGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACCTACCCGTTTAAAGAATTGGCCGGAGTCGGAGTCGCGTTTAAGCTTGCTCACGCTTTATTGGGCGAAC
TTCCAGATGAACTGCTTGACTTGGCGGCAATCGGTACTATTGCCGATCTTGTCCCGCTGCATGACGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTTCGGCGGACGACTCGGCTGGGTTTAAAAGAGCTGATCAAGCTGTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACAGTCGGTTTCCAGCTTGCACCAAGGCTGAATGCTGTCGGAAGAATTGAACAGGCTGATC
CCGCTGTTCATTTGCTCATGTCAGAGGATCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATTGATCAGCTGAACAAAGAA
CGCCAAAAGATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAGCAAGGTCTCAATCAAACTGCAATTGT
CGTAGCCAAAGCCGGGTGGAATCCGGGAGTCGTCGGGATTGTGGCTTCAAAGCTAGTGGACCGTTTCTACAGACCGGCCA
TTGTGCTCGGCATTGATGAAGAAAAAGGGATTGCTAAAGGTTCGGCCCGAAGCATAAGGGGCTTTAATTTATTCGAGAGC
CTTTCTGAATGCAGAGATATTCTCCCTCATTTCGGCGGTCATCCAATGGCGGCGGGGATGACGCTGAATGCCGAAGATGT
GCCGGGTTTGCGTAACAGGCTGAATGAAATAGCGAACAACACGCTTACGGAAGAAGATTTTATTCCTGTACAGGAAGTCG
ATCTTGTTTGCGATGTCGAGGACATTACAGTTGAAAGCATCACAGAGATGAACCAGCTGTCACCATTTGGCATGCTGAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCTGTGCTGGAAGATGTCCGCAAGATCGGGGCTAATAAAAATCATGTCAAAAT
GACGGTCAGAAACGAGTCATCCCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTTGAAGAAGGCATCGTCCCGGGTA
CAAGAATTTCAATTGTCGGCGAGATGTCAATCAACGAATGGAACAATAGAAAAAAACCGCAGCTTATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGATGTGGGAAGACACAGTTTCCGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAGACTGAAGACCTTCGCCGCGAAGTGCACGTCATTA
GCTCTGTAGATCAAGCGAAGGCGTTTGACCTCGATGGTGCATATATTGTATTACTTGATCCGCCGCCTTCGTTGGACATG
CTTGCACGTTTGCTGGAAGGCAAGGCGCCTGAGCGGATATATTTCATTTTTCTCAATCATGAGGACCACTTTTTATCAAC
ATTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTCTTGCTGAAAAGAGGCGCTTTTGACGTAAAAAAACACGGTT
CAGAGCTTGCAAGACATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTAGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGGTTAGCGGAGTAAAGAAACGCGACTTAACAGACTCACAAACATATCAGGAGAA
ACAGCAGCTGATGGAACTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

96.947

100

0.969

Multiple sequence alignment