Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DKG76_RS09000 Genome accession   NZ_CP029465
Coordinates   1805896..1806675 (+) Length   259 a.a.
NCBI ID   WP_003238551.1    Uniprot ID   A0A9W5PD99
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800896..1811675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS08980 (DKG76_08980) trmFO 1801589..1802896 (+) 1308 WP_003238558.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DKG76_RS08985 (DKG76_08985) xerC 1802964..1803878 (+) 915 WP_003238557.1 tyrosine recombinase XerC -
  DKG76_RS08990 (DKG76_08990) clpQ 1803891..1804436 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  DKG76_RS08995 (DKG76_08995) hslU 1804444..1805856 (+) 1413 WP_258173531.1 HslU--HslV peptidase ATPase subunit -
  DKG76_RS09000 (DKG76_09000) codY 1805896..1806675 (+) 780 WP_003238551.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DKG76_RS09005 (DKG76_09005) flgB 1807056..1807445 (+) 390 WP_003238548.1 flagellar basal body rod protein FlgB -
  DKG76_RS09010 (DKG76_09010) flgC 1807445..1807897 (+) 453 WP_003238546.1 flagellar basal body rod protein FlgC -
  DKG76_RS09015 (DKG76_09015) fliE 1807909..1808229 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  DKG76_RS09020 (DKG76_09020) fliF 1808275..1809884 (+) 1610 Protein_1719 flagellar basal-body MS-ring/collar protein FliF -
  DKG76_RS09025 (DKG76_09025) fliG 1809897..1810912 (+) 1016 Protein_1720 flagellar motor switch protein FliG -
  DKG76_RS09030 (DKG76_09030) fliH 1810905..1811657 (+) 753 WP_003238540.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29036.26 Da        Isoelectric Point: 4.7210

>NTDB_id=292728 DKG76_RS09000 WP_003238551.1 1805896..1806675(+) (codY) [Bacillus inaquosorum strain KCTC 13429]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=292728 DKG76_RS09000 WP_003238551.1 1805896..1806675(+) (codY) [Bacillus inaquosorum strain KCTC 13429]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCAGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AACGTCCCTGAAACATCTTCTAACTTGGACATTAATAGTGAATATACTGCTTTTCCTGTTGAGAATAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACCCTCATTCTTTCACGTTTACAGGATC
AATTTCATGATGATGATTTAATACTCGCTGAATACGGCGCTACAGTTGTCGGCATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTTCTCGTTGCAAGTAAAATCGCAGACCGTGTCGGCATTACCC
GCTCTGTGATTGTTAATGCACTCAGAAAGCTGGAAAGCGCCGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTTCTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment