Detailed information NTG0292667

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: DKE43_RS08335
• Genome accession: NZ_CP029464
• Coordinates: 1589548..1591932 (-)
• Length: 794 a.a.
• NCBI ID: WP_060596861.1
• Uniprot ID: A0AAE3WIY5
• Organism: Bacillus pumilus strain ZB201701
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1584548..1596932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKE43_RS08300 (DKE43_08330)	-	1585611..1586339 (+)	729	WP_060596857.1	amino acid ABC transporter ATP-binding protein	-
DKE43_RS08305 (DKE43_08335)	-	1586353..1587162 (+)	810	WP_060596858.1	transporter substrate-binding domain-containing protein	-
DKE43_RS08310 (DKE43_08340)	-	1587243..1587896 (+)	654	WP_060596859.1	amino acid ABC transporter permease	-
DKE43_RS08315 (DKE43_08345)	-	1587912..1588562 (+)	651	WP_060596860.1	amino acid ABC transporter permease	-
DKE43_RS08320 (DKE43_08350)	-	1588598..1588729 (-)	132	WP_003216198.1	YrzQ family protein	-
DKE43_RS08325 (DKE43_08355)	-	1588750..1588941 (-)	192	WP_003216308.1	hypothetical protein	-
DKE43_RS08330 (DKE43_08360)	-	1588955..1589413 (-)	459	WP_034662034.1	PRC-barrel domain-containing protein	-
DKE43_RS08335 (DKE43_08365)	recD2	1589548..1591932 (-)	2385	WP_060596861.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DKE43_RS08340 (DKE43_08370)	-	1591952..1592605 (-)	654	WP_034661516.1	tetratricopeptide repeat protein	-
DKE43_RS08345 (DKE43_08375)	mnmA	1592666..1593784 (-)	1119	WP_060596862.1	tRNA 2-thiouridine(34) synthase MnmA	-
DKE43_RS08350 (DKE43_08380)	-	1593880..1595022 (-)	1143	WP_060596863.1	cysteine desulfurase family protein	-
DKE43_RS08355 (DKE43_08385)	-	1595041..1595460 (-)	420	WP_012010726.1	Rrf2 family transcriptional regulator	-
DKE43_RS08360 (DKE43_08390)	-	1595667..1596932 (+)	1266	WP_034661526.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89036.55 Da
• Isoelectric Point: 5.2082

>NTDB_id=292667 DKE43_RS08335 WP_060596861.1 1589548..1591932(-) (recD2) [Bacillus pumilus strain ZB201701]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGNQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVANQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSADQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLMQTDEVMDAELAALQKELPFSVHDANIGMEGITPFDFMHE

Nucleotide

• Length: 2385 bp

>NTDB_id=292667 DKE43_RS08335 WP_060596861.1 1589548..1591932(-) (recD2) [Bacillus pumilus strain ZB201701]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAAGAAACTTACACCTTCTATGGCAAAGTCACAAGCCATCCGAAATTTGGTGAA
CAGTTTCAGGCCACTCATTTTCAAAAGGAAGTACCGACAACGAAGCAAGGAATCATTCATTATCTCTCAAGTGATTTATT
TGAGGGGATAGGGAAAAAGACGGCGGAAGAAATTGTGGGGCAGCTTGGCAATCAGACGCTTCATAAAATTATGCGTGACC
CAGCTGTTTTGTATGATGTTCCGCGCTTATCAAAAAAGAAGGCAGATAAGCTGGCTGCAGCGCTCCAGGAACATCAAGGA
TTGGAACAAATCATGATCAGCCTGAATCAATATGGCTTTGGTCCTCAGCTCAGCATGAAGATATACCAAGTGTACGAGAG
TGAAACGCTGCAAAAGATTGAGGAAAACCCGTATCAGCTCGTCAAGGATGTCGAAGGTATCGGATTTATTAAGGCGGATG
AGCTTGGCGCTAGAACCGGCATCTCAGGAAATGACCCAGAGCGAATCCGTGCAGCCCTGCTTTATACAGTCGAAACAGCA
AGTCTTCAGGACGGTCATACGTACATACAAACGAAAGATTTGATCGTTGAAACCCGCAAGCTGCTCAATCAGACAGGCAA
TGAGTACAAAGTGACGGAAATGGATGTCGCCAATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGCTGCTATCATCCGTCCTTATTTTATGCGGAGCAAAGTGTCGCCAAACGAATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGATCAATTCCCTGAATCAGAATTCCTGCTCGCACTTGGCGAGCTCGAGGAACGGCTGGGCGTCCAGTATGCGCC
GACACAAAAGGAAGCGATTCAAAAGGCACTCATGTCCCCGATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAGACAA
CGGTCATTAAAGGGATTGTTGAGCTTTACAGCGATCTTCACGGTGTATCTCTTGATCCGAGTGATTACAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGAGCAGCTAAACGGATGACAGAATCAACAGGGCTTCCAGCTGTAAC
CATTCACCGTTTGCTCGGCTGGAACGGATCAGAGGGCTTTTCGCATGATGAGGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGTATGCTGGATATTTGGCTTGCGAATCACTTGTTTAAAGCGATTCCTGATCATATCCAAGTGATC
ATGGTAGGAGATGAACATCAGCTTCCATCTGTCGGACCAGGCCAAGTGTTAAGGGATTTACTTGCCTCACAAGCCGTACC
AGCTGTTACACTGACAGATATTTACCGGCAGGCAGACGGCTCCAGCATTGTTGAACTTGCACATGATATGAAAAATGGCG
TCCTGCCAAAAGATATTACCGCACGTTCAAAGGATCGATCTTTCATAAAATGCTCAGCTGATCAAATGAAAGAAGTGATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCAAAAGACATTCAAGTGCTTGCGCCAATGTATAAAGGGAA
AGCAGGTATTAATGAGCTCAATAAAATGCTGCAGCACATTTTGAATCCAAAAAAACCAAAGGGCAGAGAAATCCCGTTTG
GTGATGTGGTGTACCGGACCGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCGGAAAATAATATTTTTAACGGTGATATC
GGCGAAATTGTCTCTATTTTTTATGCGAAAGAAAACACGGAAAAAGAAGACATGGCTGTGATCTCCTTTGATGGGAATGA
AATCACCTTTACAAAAAAGGATTTTCATCAATTTACACATGCCTATTGCTGCTCCATCCACAAATCACAAGGCAGTGAAT
TCCCAATCGTTGTGCTGCCAGTCGTGAGAAGCTACTACAGAATGCTGCGGCGAAATCTGCTGTACACAGCCATTACACGA
AGTAAAAAGTTTTTAATCCTGTGCGGCGAGGAATCAGCGCTGGAGTGGGGCGTGAAAAACAATGAGGATTCGCTCAGACA
AACGTCCTTAACGATGCGGCTGATGCAAACTGATGAAGTTATGGATGCGGAGCTTGCAGCGCTCCAAAAAGAGCTTCCGT
TTAGCGTACATGACGCAAATATTGGCATGGAGGGAATCACTCCGTTTGATTTTATGCATGAATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (345-553)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80	100	0.801