Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DKE43_RS04040 Genome accession   NZ_CP029464
Coordinates   777883..778662 (+) Length   259 a.a.
NCBI ID   WP_012009951.1    Uniprot ID   A8FD81
Organism   Bacillus pumilus strain ZB201701     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 772883..783662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS04020 (DKE43_04035) trmFO 773587..774891 (+) 1305 WP_034662383.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DKE43_RS04025 (DKE43_04040) xerC 774954..775871 (+) 918 WP_060596252.1 tyrosine recombinase XerC -
  DKE43_RS04030 (DKE43_04045) hslV 775886..776431 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  DKE43_RS04035 (DKE43_04050) hslU 776448..777848 (+) 1401 WP_060596254.1 HslU--HslV peptidase ATPase subunit -
  DKE43_RS04040 (DKE43_04055) codY 777883..778662 (+) 780 WP_012009951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DKE43_RS04045 (DKE43_04060) flgB 778950..779339 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  DKE43_RS04050 (DKE43_04065) flgC 779339..779791 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  DKE43_RS04055 (DKE43_04070) fliE 779803..780120 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  DKE43_RS04060 (DKE43_04075) fliF 780170..781762 (+) 1593 WP_060596256.1 flagellar basal-body MS-ring/collar protein FliF -
  DKE43_RS04065 (DKE43_04080) fliG 781774..782790 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  DKE43_RS04070 (DKE43_04085) fliH 782783..783547 (+) 765 WP_034662367.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29044.31 Da        Isoelectric Point: 4.6614

>NTDB_id=292656 DKE43_RS04040 WP_012009951.1 777883..778662(+) (codY) [Bacillus pumilus strain ZB201701]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=292656 DKE43_RS04040 WP_012009951.1 777883..778662(+) (codY) [Bacillus pumilus strain ZB201701]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTGTTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAACCTTGACATTAATAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGCACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTTGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FD81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.753

100

0.958
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment