Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   EQH88_RS08490 Genome accession   NZ_CP035161
Coordinates   1587681..1588130 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM103862     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582681..1593130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH88_RS08450 (EQH88_08450) ctaE 1582697..1583320 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  EQH88_RS08455 (EQH88_08455) ctaF 1583323..1583655 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  EQH88_RS08460 (EQH88_08460) ctaG 1583683..1584576 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  EQH88_RS08465 (EQH88_08465) ylbA 1584608..1584970 (-) 363 WP_003232238.1 YugN family protein -
  EQH88_RS08470 (EQH88_08470) ylbB 1585110..1585556 (+) 447 WP_029726520.1 CBS domain-containing protein -
  EQH88_RS08475 (EQH88_08475) ylbC 1585640..1586680 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  EQH88_RS08480 (EQH88_08480) ylbD 1586912..1587310 (+) 399 WP_003232233.1 YlbD family protein -
  EQH88_RS08485 (EQH88_08485) ylbE 1587326..1587565 (+) 240 WP_003232231.1 YlbE-like family protein -
  EQH88_RS08490 (EQH88_08490) ylbF 1587681..1588130 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  EQH88_RS08495 (EQH88_08495) ylbG 1588185..1588457 (+) 273 WP_024573211.1 YlbG family protein -
  EQH88_RS08500 (EQH88_08500) rsmD 1588780..1589334 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EQH88_RS08505 (EQH88_08505) coaD 1589339..1589824 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  EQH88_RS08510 (EQH88_08510) spoVV 1589835..1591061 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  EQH88_RS08515 (EQH88_08515) ylbK 1591242..1592024 (+) 783 WP_003232221.1 patatin family protein -
  EQH88_RS08520 (EQH88_08520) sepM 1592026..1593051 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=292546 EQH88_RS08490 WP_003221370.1 1587681..1588130(+) (ylbF) [Bacillus subtilis strain SRCM103862]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=292546 EQH88_RS08490 WP_003221370.1 1587681..1588130(+) (ylbF) [Bacillus subtilis strain SRCM103862]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1