Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF27147_RS06605 | Genome accession | NZ_CP029423 |
| Coordinates | 1409536..1410582 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile R20291 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1377604..1459345 | 1409536..1410582 | within | 0 |
Gene organization within MGE regions
Location: 1377604..1459345
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF27147_RS06470 (CDIF27147_01316) | - | 1378595..1379263 (-) | 669 | WP_009892970.1 | YwaF family protein | - |
| CDIF27147_RS06475 (CDIF27147_01317) | - | 1379532..1379672 (+) | 141 | WP_003419462.1 | hypothetical protein | - |
| CDIF27147_RS06480 (CDIF27147_01318) | - | 1379847..1380167 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| CDIF27147_RS06485 (CDIF27147_01319) | - | 1380287..1381024 (-) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| CDIF27147_RS06490 (CDIF27147_01320) | acd | 1381239..1383062 (+) | 1824 | WP_009892971.1 | N-acetylglucosaminidase | - |
| CDIF27147_RS06495 (CDIF27147_01321) | - | 1383277..1387575 (+) | 4299 | WP_009892973.1 | PolC-type DNA polymerase III | - |
| CDIF27147_RS06500 (CDIF27147_01322) | rimP | 1387779..1388240 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF27147_RS06505 (CDIF27147_01323) | nusA | 1388270..1389424 (+) | 1155 | WP_009889093.1 | transcription termination factor NusA | - |
| CDIF27147_RS06510 (CDIF27147_01324) | rnpM | 1389431..1389712 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF27147_RS06515 (CDIF27147_01325) | - | 1389702..1390013 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF27147_RS06520 (CDIF27147_01326) | infB | 1390035..1391975 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF27147_RS06525 (CDIF27147_01327) | rbfA | 1392018..1392398 (+) | 381 | WP_009889095.1 | 30S ribosome-binding factor RbfA | - |
| CDIF27147_RS06530 (CDIF27147_01328) | - | 1392379..1393362 (+) | 984 | WP_095890265.1 | DHH family phosphoesterase | - |
| CDIF27147_RS06535 (CDIF27147_01329) | truB | 1393375..1394280 (+) | 906 | WP_009889097.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF27147_RS06540 (CDIF27147_01330) | - | 1394411..1395340 (+) | 930 | WP_009889098.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF27147_RS06545 (CDIF27147_01331) | rpsO | 1395444..1395701 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF27147_RS06550 (CDIF27147_01332) | - | 1395941..1396786 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF27147_RS06555 (CDIF27147_01333) | pnp | 1396911..1399022 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF27147_RS06560 (CDIF27147_01334) | - | 1399288..1400031 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF27147_RS06565 (CDIF27147_01335) | - | 1400189..1401436 (+) | 1248 | WP_009889101.1 | M16 family metallopeptidase | - |
| CDIF27147_RS06570 (CDIF27147_01336) | - | 1401471..1401716 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDIF27147_RS06575 (CDIF27147_01337) | dapG | 1401726..1402949 (+) | 1224 | WP_009889103.1 | aspartate kinase | - |
| CDIF27147_RS06580 (CDIF27147_01338) | - | 1403062..1403796 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDIF27147_RS06585 (CDIF27147_01339) | - | 1403919..1406330 (+) | 2412 | WP_009889104.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF27147_RS06590 (CDIF27147_01340) | mnmH | 1406333..1407391 (+) | 1059 | WP_009889105.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF27147_RS06595 (CDIF27147_01341) | rimO | 1407385..1408719 (+) | 1335 | WP_009892976.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF27147_RS06600 (CDIF27147_01342) | pgsA | 1408706..1409248 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF27147_RS06605 (CDIF27147_01343) | recA | 1409536..1410582 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDIF27147_RS06610 (CDIF27147_01344) | rny | 1410758..1412299 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF27147_RS06615 (CDIF27147_01345) | - | 1412934..1414715 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF27147_RS06620 (CDIF27147_01346) | lepB | 1414797..1415327 (-) | 531 | WP_009889108.1 | signal peptidase I | - |
| CDIF27147_RS06625 (CDIF27147_01347) | - | 1415367..1416191 (-) | 825 | WP_009889109.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF27147_RS06630 (CDIF27147_01348) | - | 1416448..1417356 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF27147_RS06635 (CDIF27147_01349) | purB | 1417500..1418945 (+) | 1446 | WP_009889111.1 | adenylosuccinate lyase | - |
| CDIF27147_RS06640 (CDIF27147_01350) | - | 1419256..1419708 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF27147_RS06645 (CDIF27147_01351) | - | 1420121..1421698 (+) | 1578 | WP_009889112.1 | PTS transporter subunit EIIC | - |
| CDIF27147_RS06650 (CDIF27147_01352) | - | 1421857..1422609 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF27147_RS06655 (CDIF27147_01353) | - | 1422742..1424088 (+) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| CDIF27147_RS06660 (CDIF27147_01354) | - | 1424200..1425396 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF27147_RS06665 (CDIF27147_01355) | galT | 1425781..1426731 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF27147_RS06670 (CDIF27147_01356) | - | 1426892..1427644 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF27147_RS06675 (CDIF27147_01357) | - | 1427736..1428512 (-) | 777 | WP_009889114.1 | 3'-5' exonuclease | - |
| CDIF27147_RS06680 (CDIF27147_01358) | - | 1428827..1430725 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF27147_RS06685 (CDIF27147_01359) | - | 1430853..1431974 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDIF27147_RS06690 (CDIF27147_01360) | - | 1432173..1432505 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF27147_RS06695 (CDIF27147_01361) | - | 1432492..1433550 (+) | 1059 | WP_012816112.1 | DUF1700 domain-containing protein | - |
| CDIF27147_RS06700 (CDIF27147_01362) | - | 1433543..1434613 (+) | 1071 | WP_009889118.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF27147_RS06705 (CDIF27147_01363) | - | 1434715..1435251 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF27147_RS06710 (CDIF27147_01364) | - | 1435368..1436075 (+) | 708 | WP_009889121.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF27147_RS06715 (CDIF27147_01365) | - | 1436077..1436793 (+) | 717 | WP_009889122.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF27147_RS06720 (CDIF27147_01366) | - | 1436795..1437553 (+) | 759 | WP_009889124.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF27147_RS06725 (CDIF27147_01367) | - | 1437697..1439085 (+) | 1389 | WP_009889126.1 | two-component system sensor histidine kinase | - |
| CDIF27147_RS06730 (CDIF27147_01368) | - | 1439161..1439982 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDIF27147_RS06735 (CDIF27147_01369) | - | 1440233..1441387 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| CDIF27147_RS06740 (CDIF27147_01370) | - | 1441570..1441770 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF27147_RS06745 (CDIF27147_01371) | - | 1442191..1442619 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF27147_RS06750 (CDIF27147_01372) | - | 1442762..1443517 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF27147_RS06755 (CDIF27147_01374) | - | 1444218..1444724 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF27147_RS06760 (CDIF27147_01375) | - | 1444806..1445126 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF27147_RS06765 (CDIF27147_01376) | - | 1445295..1445492 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF27147_RS06770 (CDIF27147_01377) | - | 1445597..1446037 (+) | 441 | WP_009889133.1 | hypothetical protein | - |
| CDIF27147_RS06775 (CDIF27147_01378) | - | 1446286..1446729 (+) | 444 | WP_009889135.1 | phage tail terminator family protein | - |
| CDIF27147_RS06780 (CDIF27147_01379) | - | 1446734..1447798 (+) | 1065 | WP_009889137.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF27147_RS06785 (CDIF27147_01380) | - | 1447812..1448240 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDIF27147_RS06790 (CDIF27147_01381) | - | 1448354..1448800 (+) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| CDIF27147_RS06795 (CDIF27147_01382) | - | 1448827..1448994 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDIF27147_RS06800 (CDIF27147_01383) | - | 1448994..1451447 (+) | 2454 | WP_009889141.1 | hypothetical protein | - |
| CDIF27147_RS06805 (CDIF27147_01384) | - | 1451447..1451869 (+) | 423 | WP_009889143.1 | phage baseplate protein | - |
| CDIF27147_RS06810 (CDIF27147_01385) | - | 1452151..1453680 (+) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| CDIF27147_RS06815 (CDIF27147_01386) | - | 1453696..1454022 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| CDIF27147_RS06820 (CDIF27147_01387) | - | 1454022..1454450 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| CDIF27147_RS06825 (CDIF27147_01388) | - | 1454443..1455495 (+) | 1053 | WP_009889148.1 | baseplate J/gp47 family protein | - |
| CDIF27147_RS06830 (CDIF27147_01389) | - | 1455492..1456190 (+) | 699 | WP_009889149.1 | putative phage tail protein | - |
| CDIF27147_RS06835 (CDIF27147_01390) | - | 1456191..1457177 (+) | 987 | WP_009889153.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=292332 CDIF27147_RS06605 WP_003428218.1 1409536..1410582(+) (recA) [Clostridioides difficile R20291]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=292332 CDIF27147_RS06605 WP_003428218.1 1409536..1410582(+) (recA) [Clostridioides difficile R20291]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.