Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DF184_RS06600 Genome accession   NZ_CP029398
Coordinates   1318922..1319761 (-) Length   279 a.a.
NCBI ID   WP_044676739.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1313922..1324761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS06585 (DF184_06585) uidA 1314282..1316081 (-) 1800 WP_109371598.1 beta-glucuronidase -
  DF184_RS06590 (DF184_06590) - 1316097..1317125 (-) 1029 WP_109371600.1 sugar kinase -
  DF184_RS06595 (DF184_06595) - 1317182..1318735 (-) 1554 WP_109371602.1 MFS transporter -
  DF184_RS06600 (DF184_06600) endA 1318922..1319761 (-) 840 WP_044676739.1 DNA/RNA non-specific endonuclease Machinery gene
  DF184_RS06605 (DF184_06605) - 1319791..1319982 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  DF184_RS06610 (DF184_06610) murA 1319975..1321258 (-) 1284 WP_024413088.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DF184_RS06615 (DF184_06615) - 1321282..1321506 (-) 225 WP_024387485.1 DUF1146 family protein -
  DF184_RS06620 (DF184_06620) - 1321566..1321982 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  DF184_RS06625 (DF184_06625) atpD 1321992..1323398 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  DF184_RS06630 (DF184_06630) - 1323418..1324296 (-) 879 WP_002939795.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30205.38 Da        Isoelectric Point: 6.2370

>NTDB_id=292275 DF184_RS06600 WP_044676739.1 1318922..1319761(-) (endA) [Streptococcus suis strain HN105]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNIADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=292275 DF184_RS06600 WP_044676739.1 1318922..1319761(-) (endA) [Streptococcus suis strain HN105]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTCGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACATTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGGCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGTTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAATGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595

Multiple sequence alignment