Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DI243_RS11815 Genome accession   NZ_CP029370
Coordinates   2648794..2650644 (+) Length   616 a.a.
NCBI ID   WP_040101333.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain CJX518     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2643794..2655644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI243_RS11795 (DI243_11875) - 2644340..2645350 (+) 1011 WP_040101335.1 CobW family GTP-binding protein -
  DI243_RS11800 (DI243_11880) folE2 2645367..2646320 (+) 954 Protein_2284 GTP cyclohydrolase FolE2 -
  DI243_RS11805 (DI243_11885) - 2646551..2646958 (+) 408 WP_013371190.1 MarR family winged helix-turn-helix transcriptional regulator -
  DI243_RS11810 (DI243_11890) rcrP 2647038..2648807 (+) 1770 WP_040101334.1 ABC transporter ATP-binding protein Regulator
  DI243_RS11815 (DI243_11895) rcrQ 2648794..2650644 (+) 1851 WP_040101333.1 ABC transporter ATP-binding protein Regulator
  DI243_RS11820 (DI243_11900) - 2650820..2651982 (+) 1163 WP_412534813.1 IS3 family transposase -
  DI243_RS11825 (DI243_11910) - 2652856..2653824 (+) 969 WP_080771849.1 zinc-binding dehydrogenase -
  DI243_RS11830 (DI243_11915) trxA 2653944..2654261 (+) 318 WP_013371197.1 thioredoxin -
  DI243_RS11835 (DI243_11920) - 2654383..2655153 (+) 771 WP_013371198.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68064.94 Da        Isoelectric Point: 6.7419

>NTDB_id=292050 DI243_RS11815 WP_040101333.1 2648794..2650644(+) (rcrQ) [Paenibacillus polymyxa strain CJX518]
MDKNEHTVGSKYIKMKQQGPMGRGPTEGMGTGKKANDFRKNLRQLLSYIKAYAPMIILSMVLALAGSVFNVIGPDKLSDI
ANLIQEGIVTGIDINAIQKIVLVLVVLYGLGLIFNYFQGFITVTVSQRLTKKMRTELSQKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTITGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEVFHGINGRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCIVGALLVNQHVITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLDEEELKDESDKTMKLDNAKGDVEFKHVRFGYNEDHMIIKDFSMKA
EAGQKVAIVGPTGAGKTTLVNLLMRFYELNGGEIYIDGTPISQLTRENVHKLFCMVLQDTWLFEGTIRENIVFSQDHVTD
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKAILSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGNIIETGNHGELLGKGGFYADLYNSQFENAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=292050 DI243_RS11815 WP_040101333.1 2648794..2650644(+) (rcrQ) [Paenibacillus polymyxa strain CJX518]
ATGGACAAGAATGAACACACCGTCGGCAGTAAGTATATCAAAATGAAACAGCAAGGTCCCATGGGTAGAGGTCCTACGGA
GGGGATGGGGACTGGTAAAAAAGCGAATGATTTTAGAAAAAACTTACGCCAGCTCTTATCCTACATCAAGGCCTATGCGC
CTATGATTATCCTCTCTATGGTGCTGGCACTGGCCGGTTCCGTCTTCAATGTGATTGGTCCGGATAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATTGTAACAGGGATTGATATAAATGCTATTCAGAAGATTGTTCTTGTACTGGTAGTTTT
GTATGGTCTCGGCCTTATCTTTAATTATTTCCAAGGATTCATTACGGTAACCGTGTCACAGCGCCTTACAAAGAAGATGC
GGACAGAACTGTCCCAAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTATGGTAATGTGCTCAGCCGT
GTGACTAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACACTTGTCAGCGCACTGGCAACCTTTGT
GGGTGCATTGATTATGATGCTGTATACGAACTGGATCATGACCATTACCGGGATTGTAGCTACGCTGATTGGTTTTTCAC
TGATGACCGTAATTATGAAGCATTCACAAAAATATTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAGGAAGTGTTCCATGGCATTAA
TGGCCGCTTGTATACAAATGCATGGAAATCCCAGTTCATGTCTGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGTTATGTAGCGGTCTGTATCGTGGGCGCTTTGCTGGTGAACCAACATGTTATAACGATCGGAACTATTGTGGCCTTT
ATGGTGTATATTCGTCTATTTACACAGCCCTTGTCACAGTTGGCGCAGGCTGCAACCAATTTGCAATCGGCGGCTGCTGC
CAGTGAACGTGTATTCGAATTTCTGGATGAAGAAGAATTGAAAGATGAAAGTGACAAGACCATGAAGCTAGATAACGCCA
AAGGGGATGTTGAATTCAAACATGTTCGTTTCGGTTATAACGAAGACCATATGATTATCAAAGACTTCTCTATGAAAGCT
GAAGCTGGTCAGAAAGTCGCCATTGTTGGCCCGACAGGTGCTGGTAAGACGACGCTCGTGAATTTGCTCATGCGGTTCTA
TGAGCTGAACGGAGGGGAAATTTATATTGATGGAACTCCGATCAGCCAATTAACACGTGAGAATGTTCATAAATTATTCT
GTATGGTACTGCAGGATACATGGCTGTTTGAAGGAACGATTCGTGAGAATATCGTCTTTTCCCAAGACCATGTTACCGAT
GAACAGGTAGAAGCCGCATGTAGAGCAGTGGGTCTGCACAGCTTCCTTAAAACTCTGCCGCAGGGCTATGATACAGTACT
AGACGACAAAGCCATTCTCTCTGCTGGCCAAAAGCAATTGATTACCATTGCAAGAGCCATGATTGAAGATGCGCCTATGC
TCATACTGGACGAAGCCACAAGTTCGGTCGATACGCGTACGGAGTTGCTGATTCAACAAGCGATGGACCGACTTACTGTA
GGGAAAACCTCTTTTGTGATTGCCCACCGTCTCTCAACGATTAAGAACGCCGATCTGATTCTGGTCATGAAGGACGGTAA
CATTATCGAAACGGGTAATCATGGAGAATTGCTGGGTAAAGGCGGATTCTATGCCGATTTATATAACAGCCAGTTTGAAA
ATGCATCCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(57-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.153

93.669

0.526

Multiple sequence alignment