Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   DIC78_RS17805 Genome accession   NZ_CP029364
Coordinates   3471779..3474139 (+) Length   786 a.a.
NCBI ID   WP_127696703.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3466779..3479139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS17785 (DIC78_17810) - 3468097..3468393 (+) 297 WP_024122321.1 post-transcriptional regulator -
  DIC78_RS17790 (DIC78_17815) secDF 3468431..3470644 (+) 2214 WP_024122320.1 protein translocase subunit SecDF -
  DIC78_RS17795 (DIC78_17820) - 3470804..3471301 (+) 498 WP_024122319.1 cation:proton antiporter regulatory subunit -
  DIC78_RS17800 (DIC78_17825) - 3471377..3471712 (+) 336 WP_024122318.1 LapA family protein -
  DIC78_RS17805 (DIC78_17830) recJ 3471779..3474139 (+) 2361 WP_127696703.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  DIC78_RS17810 (DIC78_17835) - 3474145..3474657 (+) 513 WP_010335123.1 adenine phosphoribosyltransferase -
  DIC78_RS17815 (DIC78_17840) relA 3474825..3477029 (+) 2205 WP_010335122.1 GTP diphosphokinase -
  DIC78_RS17820 (DIC78_17845) dtd 3477042..3477482 (+) 441 WP_106022203.1 D-aminoacyl-tRNA deacylase -
  DIC78_RS17825 (DIC78_17850) - 3477507..3479060 (-) 1554 WP_106020185.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88462.10 Da        Isoelectric Point: 4.9486

>NTDB_id=291996 DIC78_RS17805 WP_127696703.1 3471779..3474139(+) (recJ) [Bacillus halotolerans strain ZB201702]
MLASKMRWEIQRPDQEKVKSLTEQLDITPLVASLLVKRGFDTAENARLFLHTKDTEFYDPYEMKGMKEAVERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLEKLRRTNRLGLKELIKLSGGEIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMSEDPFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQEGLNQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPELRNRLNEIADNTLTEEDFIPVQEVDLVCSVEDITVESITEMNLLSPFGMLN
PKPHVMVENAVLEDVRKIGANKNHVKMTIRNDSFQLDCVGFNKGELEENIVPGSKISIVGEMSINEWNNRKKPQLMIKDA
AVAEWQLFDLRGKRTWKDPVSALPSDKRVIVSFKEETKVLLQSEDFRHDVHVISSEDQAKACELDNAYIVLLDSPPSLDM
LARLLEGKAPERIYFIFLNHEEHFLSSFPARDHFKWYYAFLLKRGTFDLNKHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGAKKRDLTDSQTYQAKQQLMELDQKLNYSAAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=291996 DIC78_RS17805 WP_127696703.1 3471779..3474139(+) (recJ) [Bacillus halotolerans strain ZB201702]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTTGCGTCGCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAACGCGAGGCTGTTTTTACATACAAAGG
ATACCGAATTCTATGATCCCTATGAGATGAAGGGGATGAAAGAAGCGGTAGAACGAATAAAACAGGCGATTTCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACTTTGCAAAAGCT
GTCGGCGCAAGTTGATTTTTATATACCTGACCGGTTTAAAGAAGGCTACGGCCCTAATGAACAGGCATTTCGCTCGATTA
AAGAACGAGGCTTCTCACTCATTATTACGGTTGATACGGGGATTGCCGCTGTCCATGAAGCGAAGGTAGCAAAGGAACTT
GGCTTAGATGTCATCATTACCGACCACCATGAGCCTGGACCGGAGCTTCCGGATGTCCATGCGATCGTTCACCCGAAGCA
GCCTGGCTGCACCTATCCTTTTAAGGAGCTTGCAGGAGTGGGCGTGGCGTTTAAGCTTGCCCACGCATTATTGGGCGAAT
TGCCAGATGAACTTCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTTCCGTTGCATGATGAAAACAGATTAATT
GCAACATTAGGTCTCGAAAAGCTCCGGCGGACGAACCGGCTTGGCTTAAAAGAACTGATTAAGCTCTCAGGCGGAGAAAT
CGGAGAAGCGAACGAAGAAACCGTCGGATTTCAGCTCGCACCGAGACTGAACGCAGTCGGAAGAATTGAACAGGCCGATC
CTGCTGTTCATTTGCTGATGTCAGAGGACCCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATCGATCAGCTTAATAAAGAA
CGGCAAAAGATGGTCAGCAAAATGACGGATGAAGCGATTGAAATGGTTGAACAAGAAGGGCTTAATCAAACTGCGATTGT
CGTGGCAAAAGCAGGATGGAATCCCGGAGTCGTCGGAATTGTTGCTTCAAAGCTTGTAGACCGTTTTTACCGCCCGGCCA
TTGTCCTTGGAATTGATGAAGAAAAAGGGATCGCCAAAGGTTCGGCACGAAGCATCAGGGGATTTAATTTGTTTGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCGCACTTTGGAGGCCATCCAATGGCGGCTGGCATGACGCTGAATGCCGAAGATGT
GCCGGAATTGCGGAACAGGCTGAATGAGATAGCTGACAATACGCTTACAGAAGAAGATTTTATTCCTGTACAGGAAGTAG
ACCTCGTATGCAGCGTGGAGGACATTACGGTTGAAAGCATCACAGAGATGAATCTGCTTTCCCCCTTCGGCATGCTGAAC
CCGAAACCGCATGTGATGGTAGAAAACGCAGTGCTGGAAGATGTCCGCAAAATCGGGGCGAATAAAAATCATGTCAAAAT
GACGATTAGAAACGATTCCTTCCAGCTTGACTGCGTCGGTTTCAATAAAGGCGAGCTTGAGGAAAATATTGTGCCCGGTT
CAAAAATTTCGATTGTTGGTGAAATGTCGATCAACGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAGGATGCG
GCTGTTGCTGAATGGCAGCTGTTTGACTTAAGAGGAAAACGCACGTGGAAAGATCCGGTTTCCGCCCTTCCGTCTGATAA
ACGAGTCATTGTCTCCTTCAAAGAAGAAACCAAAGTGCTTCTTCAGTCTGAAGATTTTCGCCATGACGTGCACGTTATCA
GTTCTGAAGACCAAGCGAAGGCATGTGAACTTGACAATGCATATATTGTATTACTGGATTCTCCGCCTTCGCTGGACATG
CTCGCACGTTTGCTGGAAGGCAAAGCGCCTGAGCGGATTTACTTCATCTTTCTCAATCATGAGGAACACTTTTTATCATC
TTTTCCGGCAAGAGACCACTTTAAATGGTATTATGCATTCTTGCTGAAAAGAGGCACTTTTGACTTGAATAAACACGGCT
CAGAGCTTGCGAGGCATAAAGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTAATAAGCGGAGCGAAAAAACGCGATTTAACAGACTCGCAAACATATCAAGCAAA
ACAGCAGCTGATGGAGCTGGATCAAAAGCTGAATTATTCTGCGGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

93.13

100

0.931

Multiple sequence alignment