Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DIC78_RS01310 Genome accession   NZ_CP029364
Coordinates   302659..303558 (-) Length   299 a.a.
NCBI ID   WP_127695237.1    Uniprot ID   -
Organism   Bacillus halotolerans strain ZB201702     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 297659..308558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS01295 (DIC78_01320) xerC 298028..298942 (-) 915 WP_127695235.1 tyrosine recombinase XerC -
  DIC78_RS01300 (DIC78_01325) trmFO 299010..300317 (-) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DIC78_RS01305 (DIC78_01330) topA 300393..302468 (-) 2076 WP_044155905.1 type I DNA topoisomerase -
  DIC78_RS01310 (DIC78_01335) dprA 302659..303558 (-) 900 WP_127695237.1 DNA-processing protein DprA Machinery gene
  DIC78_RS01315 (DIC78_01340) sucD 303619..304521 (-) 903 WP_024121388.1 succinate--CoA ligase subunit alpha -
  DIC78_RS01320 (DIC78_01345) sucC 304550..305707 (-) 1158 WP_003238568.1 ADP-forming succinate--CoA ligase subunit beta -
  DIC78_RS01325 (DIC78_01350) - 305881..306162 (-) 282 WP_095713833.1 FlhB-like flagellar biosynthesis protein -
  DIC78_RS01330 (DIC78_01355) - 306159..307877 (-) 1719 WP_127695239.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32970.16 Da        Isoelectric Point: 9.2142

>NTDB_id=291941 DIC78_RS01310 WP_127695237.1 302659..303558(-) (dprA) [Bacillus halotolerans strain ZB201702]
MDQAAACLITCRINQLLSPSLLLKWWKADPSMSLTNPSCALETASRGKVRAAALKNKIEEQYPKLQHLLSVYHQQGINVI
PISSDQYPFWLKTIYDPPPVLFAKGDISLLSQGRKIGIVGTRHPTAYGIQVVNHLTIELCHKKWVIVSGLASGIDGLSHA
ASIKAKGRTIGVIAGGFQNIYPRENLQLAEHMAKHHLLLSEHPPETKPQKWHFPMRNRIISGLSEGIIVVQGKEKSGSLI
TAYQALEQGREVFAVPGSVFDPYAGGPVKLIQEGAKAIWSAEDIYAELPEKNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=291941 DIC78_RS01310 WP_127695237.1 302659..303558(-) (dprA) [Bacillus halotolerans strain ZB201702]
TTGGATCAGGCCGCTGCCTGTTTAATCACTTGCAGAATCAACCAATTACTATCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCCGTCAATGTCACTGACAAATCCTTCATGTGCATTAGAAACAGCTTCACGCGGCAAAGTAAGGGCTGCGGCAC
TAAAAAATAAAATAGAAGAACAATATCCAAAACTTCAGCATTTACTCTCTGTATATCATCAGCAAGGCATTAATGTCATC
CCAATATCCTCAGATCAATATCCATTCTGGCTGAAAACCATTTATGATCCGCCTCCCGTGCTGTTTGCAAAAGGTGATAT
ATCCCTTCTTTCTCAAGGGAGAAAAATAGGAATTGTAGGTACGAGACATCCGACAGCCTATGGAATTCAGGTTGTCAATC
ATCTTACAATAGAGCTTTGCCATAAAAAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATTGACGGATTGTCCCATGCT
GCAAGTATTAAGGCGAAGGGGCGGACAATCGGAGTCATCGCAGGCGGATTTCAGAACATTTATCCTCGAGAAAATCTTCA
ATTAGCAGAACACATGGCTAAACACCATCTTCTTCTGTCAGAGCATCCACCTGAAACCAAACCCCAAAAATGGCATTTCC
CTATGAGAAACCGTATCATCAGCGGGTTAAGTGAGGGCATTATTGTTGTGCAGGGCAAAGAAAAAAGCGGTTCTTTGATT
ACCGCATACCAAGCGCTGGAACAAGGGAGAGAAGTATTTGCCGTACCCGGTTCTGTATTTGATCCTTACGCCGGAGGTCC
TGTAAAATTGATTCAAGAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTATGCAGAGCTTCCTGAGAAAAACGTTC
AATATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

83.946

100

0.839

Multiple sequence alignment