Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DIC78_RS01280 Genome accession   NZ_CP029364
Coordinates   295232..296011 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus halotolerans strain ZB201702     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 290232..301011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIC78_RS01250 (DIC78_01275) fliH 290250..291002 (-) 753 WP_106020699.1 flagellar assembly protein FliH -
  DIC78_RS01255 (DIC78_01280) fliG 290995..292011 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  DIC78_RS01260 (DIC78_01285) fliF 292024..293634 (-) 1611 WP_024121396.1 flagellar basal-body MS-ring/collar protein FliF -
  DIC78_RS01265 (DIC78_01290) fliE 293680..294000 (-) 321 WP_024121395.1 flagellar hook-basal body complex protein FliE -
  DIC78_RS01270 (DIC78_01295) flgC 294011..294463 (-) 453 WP_044155899.1 flagellar basal body rod protein FlgC -
  DIC78_RS01275 (DIC78_01300) flgB 294463..294852 (-) 390 WP_010334244.1 flagellar basal body rod protein FlgB -
  DIC78_RS01280 (DIC78_01305) codY 295232..296011 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DIC78_RS01285 (DIC78_01310) hslU 296050..297453 (-) 1404 WP_044155901.1 HslU--HslV peptidase ATPase subunit -
  DIC78_RS01290 (DIC78_01315) clpQ 297470..298015 (-) 546 WP_127695233.1 ATP-dependent protease subunit ClpQ -
  DIC78_RS01295 (DIC78_01320) xerC 298028..298942 (-) 915 WP_127695235.1 tyrosine recombinase XerC -
  DIC78_RS01300 (DIC78_01325) trmFO 299010..300317 (-) 1308 WP_024121391.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=291940 DIC78_RS01280 WP_003220850.1 295232..296011(-) (codY) [Bacillus halotolerans strain ZB201702]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=291940 DIC78_RS01280 WP_003220850.1 295232..296011(-) (codY) [Bacillus halotolerans strain ZB201702]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTTAACTTTAAAGAAAT
GGCGGAAACGCTTCGGGATGTAATTGATTCCAATATTTTCGTTGTGAGCCGCAGAGGAAAACTGCTCGGCTACTCTATCA
ACCAGCAAATTGAAAATGACCGTATGAAAAAAATGCTTGAAGATCGCCAATTCCCAGAGGAATATACGAAGAATCTGTTC
AACGTCCCTGAAACATCTTCTAACCTGGATATCAACAGTGAGTATACTGCTTTCCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGAGAAAGATTAGGTACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGATGATGATTTAATACTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCAAGAAGCAAAGCAGTAGTACAAATGGCAATCAGCTCTCTTTCTTATAGTGAGCTTGAAGCAAT
TGAACACATCTTTGAAGAGCTTGACGGAAACGAAGGTCTCCTTGTTGCAAGTAAGATTGCAGACCGTGTCGGCATTACCC
GCTCAGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCCGGTGTAATTGAGTCAAGATCATTAGGAATGAAGGGTACT
TATATTAAAGTGCTCAACAACAAATTCCTGATTGAATTAGAAAATCTGAAATCCCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment