Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CDIF104452_RS11550 Genome accession   NZ_CP029345
Coordinates   2437764..2439596 (-) Length   610 a.a.
NCBI ID   WP_021364604.1    Uniprot ID   A0A9X8RGC1
Organism   Clostridioides difficile strain DSM 104452     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2432764..2444596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIF104452_RS11530 (CDIF104452_02348) - 2432788..2434152 (-) 1365 WP_021364610.1 aldehyde dehydrogenase -
  CDIF104452_RS11535 (CDIF104452_02349) - 2434464..2434988 (-) 525 WP_009897366.1 flavodoxin domain-containing protein -
  CDIF104452_RS11540 (CDIF104452_02350) - 2435038..2435535 (-) 498 WP_021364605.1 MarR family winged helix-turn-helix transcriptional regulator -
  CDIF104452_RS11545 (CDIF104452_02351) hflX 2435768..2437039 (-) 1272 WP_021364608.1 GTPase HflX -
  CDIF104452_RS11550 (CDIF104452_02352) rcrQ 2437764..2439596 (-) 1833 WP_021364604.1 ABC transporter ATP-binding protein Regulator
  CDIF104452_RS11555 (CDIF104452_02353) - 2439589..2441835 (-) 2247 WP_003433859.1 ABC transporter ATP-binding protein -
  CDIF104452_RS11560 (CDIF104452_02354) - 2441903..2442364 (-) 462 WP_003433857.1 MarR family winged helix-turn-helix transcriptional regulator -
  CDIF104452_RS11565 (CDIF104452_02355) - 2442669..2443235 (-) 567 WP_003423380.1 beta-class carbonic anhydrase -
  CDIF104452_RS11570 (CDIF104452_02356) - 2443922..2444260 (+) 339 WP_003423377.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68032.82 Da        Isoelectric Point: 5.8235

>NTDB_id=291816 CDIF104452_RS11550 WP_021364604.1 2437764..2439596(-) (rcrQ) [Clostridioides difficile strain DSM 104452]
MSRMGRGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFNAIGKILTFLLFLYLISALFSFIQGFIMSGISQKVSYNLRKEISAKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAVLILPISMFVISRIIKKSQKYFRYQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEVQIVENAVSIDGLEGKIDFENVNFGYNPNKTIINDFSVNVEPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYKMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=291816 CDIF104452_RS11550 WP_021364604.1 2437764..2439596(-) (rcrQ) [Clostridioides difficile strain DSM 104452]
ATGAGTAGAATGGGAAGAGGTCCTATGGGAAAATCTATGGGAGCAGGACAAAAAGCAAATGACTTTAAAGGGACTATGCG
AAAACTAATTGCATATTTATCTAAATTTAAAATATCAATAATTCTAGTAATTGTATTTGCTATTGGTAGTGCGTCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGAAAGGCAACTACAAAGATATTTGAAGGGCTAGTGAGTAAAGTTTCTGGAGGAAAC
GTAGGTATAGATTTTAATGCAATTGGAAAAATCTTAACCTTTTTACTTTTCCTTTATTTGATAAGTGCACTGTTCTCTTT
TATACAAGGATTTATAATGAGTGGAATTTCTCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCAGCAAAATTGGATA
GATTGCCAATGAAGTATTTTGATACTAAGACGCATGGTGAAATATTATCGAGAATTACGAATGATATAGATACTTTAAAT
CAAAGTTTAAATCAAAGTATGACACAGCTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGAATTATGACATTAGTGGCAGTTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAATAAAGAAATCAC
AAAAATACTTTAGATATCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAGGAAACTTACAGTGGCCAAACAATA
GTAAAAGCATTTAATCGTGAGGATGAAGTAATTGAAGAGTTTGATAAACTAAATGATAGCCTGTATAATTCAGCGTGGAA
ATCTCAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTATTGGAAACTTGGGATATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGTGACATACAGTCATTTATACAATATGTAAGAAACTTTACACAG
CCAATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGTCCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGTAAAATTGATTTTGAAAATGTCA
ACTTTGGATATAACCCAAACAAGACTATAATAAATGATTTCTCAGTAAATGTTGAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACAATAGTTAAACTGTTAATGAGATTTTATGATGTTAATAGCGGTTCAATACTGAT
TGATGGTCATAATATTAAAGATTTTAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTTATAGAGGCTGCTAAATCT
GCACATGTTCATAGATTTATTAAGACATTACCAGATGGATATAAGATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCTGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTT
CTGTCGATACTAGAACAGAAGTATTGATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGAGATATAGTTGAACAAGGAAATCATGA
GGAACTTCTAAAGAAAGGCGGATTCTATGCCAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-322)

ABC transporter (ABC_tran)

(385-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.438

96.885

0.498

Multiple sequence alignment