Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   DEH83_RS01005 Genome accession   NZ_CP029207
Coordinates   197291..198142 (-) Length   283 a.a.
NCBI ID   WP_003025253.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 192291..203142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS00995 (DEH83_00970) - 193621..195390 (-) 1770 WP_255776856.1 ABC transporter ATP-binding protein -
  DEH83_RS01000 (DEH83_00975) - 195400..197137 (-) 1738 Protein_197 ABC transporter ATP-binding protein -
  DEH83_RS01005 (DEH83_00980) endA 197291..198142 (-) 852 WP_003025253.1 DNA/RNA non-specific endonuclease Machinery gene
  DEH83_RS01010 (DEH83_00985) - 198350..198526 (-) 177 WP_255776857.1 DNA-directed RNA polymerase subunit beta -
  DEH83_RS01015 (DEH83_00990) murA 198519..199799 (-) 1281 WP_048800084.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  DEH83_RS01020 (DEH83_00995) - 199837..200067 (-) 231 WP_126441295.1 DUF1146 family protein -
  DEH83_RS01025 (DEH83_01000) - 200171..200590 (-) 420 WP_003069748.1 F0F1 ATP synthase subunit epsilon -
  DEH83_RS01030 (DEH83_01005) atpD 200601..202007 (-) 1407 WP_037597319.1 F0F1 ATP synthase subunit beta -
  DEH83_RS01035 (DEH83_01010) - 202042..202920 (-) 879 WP_003069751.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 31008.73 Da        Isoelectric Point: 10.4802

>NTDB_id=291151 DEH83_RS01005 WP_003025253.1 197291..198142(-) (endA) [Streptococcus constellatus strain TCV107]
MARKKSNQKVAQSVAGVFLALVLALGGYSFSNYHNHSSTKHSDSTAINRSIRKNHAAPSQELAQSVLTESVKRQLKGKIE
WNGAGAFIVNENKNDLDAKVGSIPYADNKTKLVRGRTVPTVANALLSKATRQYRNREETGNGSTTWTPAGWHQVKHLSGE
YHHAVDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWANQANASHSTGQNFYETKVRKALDKNKRVRYRVTLIYASEQD
LVPVGSHIEAKSSDGSLEINVFVPNVQTGIRLNYQTGEVTVTN

Nucleotide


Download         Length: 852 bp        

>NTDB_id=291151 DEH83_RS01005 WP_003025253.1 197291..198142(-) (endA) [Streptococcus constellatus strain TCV107]
ATGGCGAGAAAGAAATCCAACCAGAAAGTAGCGCAAAGTGTAGCAGGCGTATTTCTTGCACTTGTTCTTGCGCTGGGAGG
TTATTCTTTTAGCAATTATCATAATCATAGCAGTACGAAGCATTCTGACAGCACTGCTATTAACAGGAGTATTCGTAAGA
ATCATGCAGCACCCAGTCAAGAATTAGCACAGAGCGTTTTAACAGAATCTGTCAAACGACAGCTCAAAGGGAAAATCGAG
TGGAATGGCGCAGGGGCTTTTATTGTCAATGAGAATAAAAATGATTTAGATGCTAAAGTGGGAAGTATTCCTTATGCGGA
TAATAAGACAAAATTGGTCAGAGGTCGAACTGTTCCGACGGTAGCAAATGCTCTTTTGTCCAAAGCTACTCGTCAGTATA
GGAATCGTGAAGAAACAGGTAATGGTTCAACAACTTGGACACCTGCTGGCTGGCATCAGGTGAAGCATTTATCGGGTGAA
TATCATCATGCAGTTGACCGTGGACATCTGCTGGGTTATGCCTTGATTGGTAACTTGAAAGGCTTTGATGCTTCGACTAG
CAATCCCAAAAATATTGCGGTGCAAACGGCTTGGGCGAATCAAGCAAATGCTAGCCATTCTACAGGTCAAAATTTTTATG
AAACAAAAGTACGTAAAGCTCTTGATAAAAATAAACGAGTTCGGTATCGAGTGACCTTGATTTACGCAAGTGAGCAGGAT
TTAGTACCGGTTGGTTCACATATTGAAGCCAAGTCTAGCGACGGTAGTTTGGAAATAAATGTCTTTGTGCCAAACGTACA
GACAGGAATTCGATTAAATTATCAGACAGGAGAAGTGACGGTCACCAACTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(114-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

78.761

79.859

0.629
  endA Streptococcus pneumoniae D39

78.761

79.859

0.629
  endA Streptococcus pneumoniae R6

78.761

79.859

0.629
  endA Streptococcus pneumoniae TIGR4

78.761

79.859

0.629

Multiple sequence alignment