Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | DBX24_RS02735 | Genome accession | NZ_CP029149 |
| Coordinates | 595926..596531 (+) | Length | 201 a.a. |
| NCBI ID | WP_374210824.1 | Uniprot ID | - |
| Organism | Bergeyella cardium strain HPQL | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 590926..601531
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBX24_RS02720 (DBX24_02720) | - | 591624..592067 (-) | 444 | WP_120488500.1 | 6-carboxytetrahydropterin synthase | - |
| DBX24_RS02725 (DBX24_02725) | - | 592522..593238 (-) | 717 | WP_160223912.1 | DNA-binding domain-containing protein | - |
| DBX24_RS02730 (DBX24_02730) | - | 593322..595358 (-) | 2037 | WP_160223913.1 | FISUMP domain-containing protein | - |
| DBX24_RS02735 (DBX24_02735) | comF | 595926..596531 (+) | 606 | WP_374210824.1 | ComF family protein | Machinery gene |
| DBX24_RS02740 (DBX24_02740) | infB | 596582..599365 (-) | 2784 | WP_160223914.1 | translation initiation factor IF-2 | - |
| DBX24_RS02745 (DBX24_02745) | nusA | 599454..600689 (-) | 1236 | WP_120488495.1 | transcription termination factor NusA | - |
| DBX24_RS02750 (DBX24_02750) | rimP | 600701..601168 (-) | 468 | WP_160223915.1 | ribosome assembly cofactor RimP | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23115.82 Da Isoelectric Point: 7.8161
>NTDB_id=290734 DBX24_RS02735 WP_374210824.1 595926..596531(+) (comF) [Bergeyella cardium strain HPQL]
MIESDKAVCDACLMNIRFSYDDFGTKSELWAKCNLLFPLENAFALMIFDEVGLGRELIHQLKYDGIESIGKIFADWTAQR
LNFGEDKPDLLVTIPLHPKKQRIRGYNQLHLYAEELSKFYDIPFDHQALKRVKFQRKAQAKRNAEERKIKGQAFALNKDI
RGKHILLIDDVITTGNTMSAAAWELLKNENKLSILVMAVDL
MIESDKAVCDACLMNIRFSYDDFGTKSELWAKCNLLFPLENAFALMIFDEVGLGRELIHQLKYDGIESIGKIFADWTAQR
LNFGEDKPDLLVTIPLHPKKQRIRGYNQLHLYAEELSKFYDIPFDHQALKRVKFQRKAQAKRNAEERKIKGQAFALNKDI
RGKHILLIDDVITTGNTMSAAAWELLKNENKLSILVMAVDL
Nucleotide
Download Length: 606 bp
>NTDB_id=290734 DBX24_RS02735 WP_374210824.1 595926..596531(+) (comF) [Bergeyella cardium strain HPQL]
ATGATTGAAAGCGATAAAGCGGTGTGCGATGCCTGCTTAATGAATATTAGATTCTCTTATGATGATTTTGGAACAAAGAG
CGAACTCTGGGCAAAGTGTAACCTGCTTTTCCCTTTGGAAAATGCTTTTGCACTGATGATTTTTGATGAGGTAGGATTAG
GCAGGGAACTTATTCATCAGCTAAAATATGACGGCATAGAAAGCATTGGAAAAATCTTTGCAGACTGGACGGCTCAGAGG
CTCAATTTCGGAGAAGACAAACCCGACTTGCTTGTAACCATCCCCCTACATCCAAAGAAACAAAGGATAAGAGGCTATAA
TCAGCTACATCTCTATGCGGAGGAGCTATCAAAGTTCTATGATATTCCGTTTGACCACCAAGCACTGAAGAGAGTTAAGT
TTCAGAGAAAGGCGCAGGCAAAAAGAAATGCAGAAGAGCGGAAGATAAAAGGGCAAGCCTTCGCTTTGAATAAAGATATA
CGCGGGAAACATATCCTGCTGATAGATGATGTGATTACTACAGGAAATACAATGTCTGCCGCAGCGTGGGAGCTTCTGAA
AAATGAGAACAAGCTGAGCATTCTGGTAATGGCAGTAGATTTATAA
ATGATTGAAAGCGATAAAGCGGTGTGCGATGCCTGCTTAATGAATATTAGATTCTCTTATGATGATTTTGGAACAAAGAG
CGAACTCTGGGCAAAGTGTAACCTGCTTTTCCCTTTGGAAAATGCTTTTGCACTGATGATTTTTGATGAGGTAGGATTAG
GCAGGGAACTTATTCATCAGCTAAAATATGACGGCATAGAAAGCATTGGAAAAATCTTTGCAGACTGGACGGCTCAGAGG
CTCAATTTCGGAGAAGACAAACCCGACTTGCTTGTAACCATCCCCCTACATCCAAAGAAACAAAGGATAAGAGGCTATAA
TCAGCTACATCTCTATGCGGAGGAGCTATCAAAGTTCTATGATATTCCGTTTGACCACCAAGCACTGAAGAGAGTTAAGT
TTCAGAGAAAGGCGCAGGCAAAAAGAAATGCAGAAGAGCGGAAGATAAAAGGGCAAGCCTTCGCTTTGAATAAAGATATA
CGCGGGAAACATATCCTGCTGATAGATGATGTGATTACTACAGGAAATACAATGTCTGCCGCAGCGTGGGAGCTTCTGAA
AAATGAGAACAAGCTGAGCATTCTGGTAATGGCAGTAGATTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
48.259 |
100 |
0.483 |
| comF | Porphyromonas gingivalis W83 |
36.453 |
100 |
0.368 |