Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SGO_RS03765 Genome accession   NC_009785
Coordinates   805603..806442 (+) Length   279 a.a.
NCBI ID   WP_012000227.1    Uniprot ID   -
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 800603..811442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS03740 (SGO_0761) tuf 801466..802662 (+) 1197 WP_009754926.1 elongation factor Tu -
  SGO_RS03745 (SGO_0762) tpiA 802936..803694 (+) 759 WP_012000225.1 triose-phosphate isomerase -
  SGO_RS03750 - 803824..804057 (+) 234 WP_041789607.1 DUF1146 family protein -
  SGO_RS03755 (SGO_0763) murA 804097..805377 (+) 1281 WP_012000226.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGO_RS03760 (SGO_0764) - 805370..805558 (+) 189 WP_020992673.1 DNA-directed RNA polymerase subunit beta -
  SGO_RS03765 (SGO_0765) endA 805603..806442 (+) 840 WP_012000227.1 DNA/RNA non-specific endonuclease Machinery gene
  SGO_RS03770 (SGO_0766) - 806658..807359 (-) 702 WP_012000228.1 alpha/beta hydrolase-fold protein -
  SGO_RS03775 (SGO_0767) - 807340..808368 (-) 1029 WP_041789612.1 ABC transporter substrate-binding protein -
  SGO_RS03780 (SGO_0769) - 808513..809268 (-) 756 WP_012000231.1 ABC transporter ATP-binding protein -
  SGO_RS03785 (SGO_0770) - 809270..810316 (-) 1047 WP_012000232.1 FecCD family ABC transporter permease -
  SGO_RS11030 - 810609..810716 (+) 108 Protein_749 DNA-entry nuclease -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30866.60 Da        Isoelectric Point: 10.0956

>NTDB_id=29069 SGO_RS03765 WP_012000227.1 805603..806442(+) (endA) [Streptococcus gordonii str. Challis substr. CH1]
MKKKQEEKLFQSIVGLILALVLIAGANYFSNHQNQDKIKSNPQVQRTGRRDISTPEQALSQSVLTDSVRKQLKGNIEWNQ
AGAFIINGNKTDLNADIASQPYAQNQTKSVQGQLVPIIGNALLSKQTRQYKNREETGNGTTSWVPAGWHQVRNLSGDFNH
AVDRGHLLAYSIVGGLKNFDASTSNPENIAVQTAWANQANSPSSTGQNFYESLIRKALDKKKRVRYRVTLIYANPDDLIA
VGSHLEAKSSDGSLEFNVFVPNVQTGIRINYRTGEVTVE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=29069 SGO_RS03765 WP_012000227.1 805603..806442(+) (endA) [Streptococcus gordonii str. Challis substr. CH1]
ATGAAGAAGAAACAAGAAGAGAAACTCTTTCAAAGCATAGTAGGACTGATTCTGGCACTTGTTCTGATAGCTGGTGCTAA
TTATTTCTCAAACCATCAGAATCAGGATAAGATAAAGTCTAATCCACAGGTTCAAAGAACAGGAAGAAGGGATATCTCAA
CCCCCGAGCAAGCACTATCTCAGAGTGTGCTGACTGATTCTGTTCGCAAGCAATTAAAAGGCAACATAGAATGGAATCAG
GCAGGTGCATTTATTATTAATGGCAACAAGACAGACCTGAATGCTGATATTGCCAGTCAGCCTTATGCACAAAATCAGAC
AAAGTCAGTTCAGGGACAGTTAGTACCAATAATTGGGAATGCTCTGCTTTCTAAACAGACTAGACAATACAAAAATCGAG
AAGAAACCGGAAACGGAACGACAAGTTGGGTTCCTGCTGGCTGGCATCAAGTGAGAAATCTTAGTGGAGATTTTAATCAT
GCAGTTGATCGAGGCCATTTATTAGCTTATTCTATAGTCGGAGGCTTAAAGAACTTCGATGCTTCTACAAGTAACCCAGA
GAATATCGCTGTCCAAACGGCTTGGGCAAATCAGGCAAACAGTCCTTCATCTACTGGGCAAAATTTTTATGAAAGCTTGA
TTCGGAAGGCTTTGGATAAAAAGAAGAGAGTTCGTTATCGGGTAACCTTGATTTATGCTAATCCTGATGACTTGATAGCA
GTAGGCTCTCATTTAGAAGCAAAGTCCAGCGACGGAAGCCTCGAGTTTAATGTCTTCGTTCCAAATGTTCAAACCGGGAT
TCGTATCAACTATAGAACTGGAGAAGTAACAGTAGAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.304

80.287

0.548
  endA Streptococcus pneumoniae D39

68.304

80.287

0.548
  endA Streptococcus pneumoniae R6

68.304

80.287

0.548
  endA Streptococcus pneumoniae TIGR4

68.304

80.287

0.548

Multiple sequence alignment