Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ELB75_RS03180 Genome accession   NZ_CP034670
Coordinates   612756..613382 (+) Length   208 a.a.
NCBI ID   WP_126984188.1    Uniprot ID   -
Organism   Eikenella corrodens strain KCOM 3110     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607756..618382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELB75_RS03160 (ELB75_03160) - 608184..608690 (-) 507 WP_126982683.1 hypothetical protein -
  ELB75_RS03165 (ELB75_03165) - 608768..610540 (-) 1773 WP_126982684.1 M48 family metalloprotease -
  ELB75_RS03170 (ELB75_03170) - 610853..611284 (+) 432 WP_126982685.1 HIT family protein -
  ELB75_RS03175 (ELB75_03175) - 611457..612641 (+) 1185 WP_126982686.1 LD-carboxypeptidase -
  ELB75_RS03180 (ELB75_03180) recR 612756..613382 (+) 627 WP_126984188.1 recombination mediator RecR Machinery gene
  ELB75_RS12610 - 613939..614057 (-) 119 Protein_607 IS5/IS1182 family transposase -
  ELB75_RS03185 (ELB75_03185) - 614363..614926 (+) 564 WP_049258144.1 TIGR01440 family protein -
  ELB75_RS12425 - 614997..615902 (-) 906 WP_164726777.1 methyltransferase domain-containing protein -
  ELB75_RS03195 (ELB75_03195) - 615961..616263 (-) 303 WP_126982687.1 hypothetical protein -
  ELB75_RS03200 (ELB75_03200) - 616341..616895 (-) 555 WP_126982688.1 hypothetical protein -
  ELB75_RS03205 (ELB75_03205) - 616992..617297 (-) 306 WP_126982689.1 hypothetical protein -
  ELB75_RS03210 (ELB75_03210) - 617371..617688 (-) 318 WP_126982690.1 hypothetical protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22931.42 Da        Isoelectric Point: 6.3779

>NTDB_id=290474 ELB75_RS03180 WP_126984188.1 612756..613382(+) (recR) [Eikenella corrodens strain KCOM 3110]
MTRKKTDAFTRLTQALEVLPNIGPKSARRMAYELLRHKREGAAELAAALQHALTAVQHCRLCNTFCEGELCAICADPARD
GRRLMIVHLPADVAGMEAAHCHDGLYFVLMGQISPAQDMDLQHIALNKLVARLQESEVEEVIIATAFTPEGNATAYVLAE
LFKNLPYRVSRLAQGMPLGSELEYIDAGTLAQSVYERRLVKERGGEGE

Nucleotide


Download         Length: 627 bp        

>NTDB_id=290474 ELB75_RS03180 WP_126984188.1 612756..613382(+) (recR) [Eikenella corrodens strain KCOM 3110]
ATGACCCGCAAAAAAACCGACGCCTTCACTCGCCTCACCCAAGCCCTCGAAGTTTTGCCCAACATCGGCCCCAAATCCGC
CCGCCGCATGGCGTATGAGCTGCTGCGCCACAAGCGCGAAGGCGCCGCCGAGCTGGCCGCCGCCTTGCAGCACGCCCTCA
CAGCCGTGCAACATTGCCGCCTGTGCAACACCTTCTGCGAAGGCGAGCTCTGCGCCATCTGCGCCGACCCCGCGCGCGAC
GGCCGCCGCCTGATGATTGTGCACCTGCCCGCCGACGTGGCCGGTATGGAAGCCGCCCACTGCCACGACGGCCTCTATTT
CGTGCTCATGGGGCAAATCAGCCCCGCGCAGGACATGGATTTGCAGCACATCGCGCTCAACAAACTGGTTGCCCGCCTGC
AAGAGAGCGAAGTGGAAGAAGTGATCATCGCCACCGCCTTCACCCCCGAAGGCAACGCCACCGCCTATGTGCTGGCCGAG
CTGTTCAAAAACCTGCCCTACCGAGTGAGCCGCCTGGCGCAGGGCATGCCGCTGGGCAGCGAGCTGGAATACATCGACGC
CGGCACGCTGGCGCAATCCGTGTATGAACGGCGGCTGGTGAAAGAGCGGGGAGGGGAGGGAGAATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-173)

RecR protein (RecR_ZnF)

(42-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.688

95.673

0.361

Multiple sequence alignment