Detailed information NTG0290032

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: DDT10_RS08225
• Genome accession: NZ_CP029071
• Coordinates: 1632948..1633727 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain ALB79
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1627948..1638727

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DDT10_RS08205 (DDT10_08205)	trmFO	1628635..1629942 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
DDT10_RS08210 (DDT10_08210)	xerC	1630012..1630929 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
DDT10_RS08215 (DDT10_08215)	hslV	1630945..1631490 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
DDT10_RS08220 (DDT10_08220)	hslU	1631507..1632910 (+)	1404	WP_007409775.1	HslU--HslV peptidase ATPase subunit	-
DDT10_RS08225 (DDT10_08225)	codY	1632948..1633727 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
DDT10_RS08230 (DDT10_08230)	flgB	1634081..1634470 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
DDT10_RS08235 (DDT10_08235)	flgC	1634470..1634922 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
DDT10_RS08240 (DDT10_08240)	fliE	1634933..1635253 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
DDT10_RS08245 (DDT10_08245)	fliF	1635296..1636906 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
DDT10_RS08250 (DDT10_08250)	fliG	1636919..1637935 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
DDT10_RS08255 (DDT10_08255)	fliH	1637928..1638683 (+)	756	WP_053573438.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=290032 DDT10_RS08225 WP_003154263.1 1632948..1633727(+) (codY) [Bacillus amyloliquefaciens strain ALB79]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=290032 DDT10_RS08225 WP_003154263.1 1632948..1633727(+) (codY) [Bacillus amyloliquefaciens strain ALB79]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471