Detailed information NTG0289954

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: DDT09_RS08685
• Genome accession: NZ_CP029070
• Coordinates: 1691320..1692099 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain ALB69
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1686320..1697099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DDT09_RS08665 (DDT09_08665)	trmFO	1687007..1688314 (+)	1308	WP_061862190.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
DDT09_RS08670 (DDT09_08670)	xerC	1688384..1689301 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
DDT09_RS08675 (DDT09_08675)	hslV	1689317..1689862 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
DDT09_RS08680 (DDT09_08680)	hslU	1689879..1691282 (+)	1404	WP_061862191.1	HslU--HslV peptidase ATPase subunit	-
DDT09_RS08685 (DDT09_08685)	codY	1691320..1692099 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
DDT09_RS08690 (DDT09_08690)	flgB	1692453..1692842 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
DDT09_RS08695 (DDT09_08695)	flgC	1692842..1693294 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
DDT09_RS08700 (DDT09_08700)	fliE	1693305..1693625 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
DDT09_RS08705 (DDT09_08705)	fliF	1693668..1695278 (+)	1611	WP_022553346.1	flagellar basal-body MS-ring/collar protein FliF	-
DDT09_RS08710 (DDT09_08710)	fliG	1695291..1696307 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
DDT09_RS08715 (DDT09_08715)	fliH	1696300..1697055 (+)	756	WP_017417778.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=289954 DDT09_RS08685 WP_003154263.1 1691320..1692099(+) (codY) [Bacillus amyloliquefaciens strain ALB69]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=289954 DDT09_RS08685 WP_003154263.1 1691320..1692099(+) (codY) [Bacillus amyloliquefaciens strain ALB69]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471