Detailed information NTG0289877

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BAALB65_RS08645
• Genome accession: NZ_CP029069
• Coordinates: 1674258..1675037 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus amyloliquefaciens strain ALB65
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1669258..1680037

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAALB65_RS08625 (BAALB65_08625)	trmFO	1669945..1671252 (+)	1308	WP_109566937.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BAALB65_RS08630 (BAALB65_08630)	xerC	1671322..1672239 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
BAALB65_RS08635 (BAALB65_08635)	hslV	1672255..1672800 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
BAALB65_RS08640 (BAALB65_08640)	hslU	1672817..1674220 (+)	1404	WP_017417774.1	HslU--HslV peptidase ATPase subunit	-
BAALB65_RS08645 (BAALB65_08645)	codY	1674258..1675037 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BAALB65_RS08650 (BAALB65_08650)	flgB	1675391..1675780 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
BAALB65_RS08655 (BAALB65_08655)	flgC	1675780..1676232 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
BAALB65_RS08660 (BAALB65_08660)	fliE	1676243..1676563 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BAALB65_RS08665 (BAALB65_08665)	fliF	1676606..1678216 (+)	1611	WP_014417768.1	flagellar basal-body MS-ring/collar protein FliF	-
BAALB65_RS08670 (BAALB65_08670)	fliG	1678229..1679245 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
BAALB65_RS08675 (BAALB65_08675)	fliH	1679238..1679993 (+)	756	WP_017417778.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=289877 BAALB65_RS08645 WP_003154263.1 1674258..1675037(+) (codY) [Bacillus amyloliquefaciens strain ALB65]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=289877 BAALB65_RS08645 WP_003154263.1 1674258..1675037(+) (codY) [Bacillus amyloliquefaciens strain ALB65]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471