Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EJN89_RS00730 Genome accession   NZ_CP034441
Coordinates   142345..143118 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain PMB 81-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 137345..148118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN89_RS00695 - 137598..138368 (-) 771 WP_000473705.1 isoprenyl transferase -
  EJN89_RS00700 frr 138741..139295 (-) 555 WP_001280006.1 ribosome recycling factor -
  EJN89_RS00705 pyrH 139314..140036 (-) 723 WP_000057330.1 UMP kinase -
  EJN89_RS00710 tsf 140173..141054 (-) 882 WP_000201387.1 translation elongation factor Ts -
  EJN89_RS00715 - 141089..141202 (-) 114 WP_001789890.1 hypothetical protein -
  EJN89_RS00720 rpsB 141236..142003 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  EJN89_RS00725 - 142202..142294 (-) 93 WP_031788481.1 hypothetical protein -
  EJN89_RS00730 codY 142345..143118 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EJN89_RS00735 hslU 143143..144546 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  EJN89_RS00740 hslV 144612..145157 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  EJN89_RS00745 xerC 145154..146050 (-) 897 WP_001015602.1 tyrosine recombinase XerC -
  EJN89_RS00750 trmFO 146467..147774 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=289637 EJN89_RS00730 WP_000055337.1 142345..143118(-) (codY) [Staphylococcus aureus strain PMB 81-4]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=289637 EJN89_RS00730 WP_000055337.1 142345..143118(-) (codY) [Staphylococcus aureus strain PMB 81-4]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428