Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PAKB6_RS24125 Genome accession   NZ_CP034429
Coordinates   5092204..5092629 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain GIMC5015:PAKB6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5087204..5097629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAKB6_RS24110 (PAKB6_4758) pilX 5087774..5088361 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PAKB6_RS24115 (PAKB6_4759) pilY1 5088373..5091858 (+) 3486 WP_003115287.1 type 4a pilus biogenesis protein PilY1 -
  PAKB6_RS24120 (PAKB6_4760) pilY2 5091860..5092207 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PAKB6_RS24125 (PAKB6_4761) comF 5092204..5092629 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PAKB6_RS24130 (PAKB6_4762) ispH 5092676..5093620 (-) 945 WP_003112824.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PAKB6_RS24135 (PAKB6_4763) fkpB 5093706..5094146 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PAKB6_RS24140 (PAKB6_4764) lspA 5094139..5094648 (-) 510 WP_003112823.1 signal peptidase II -
  PAKB6_RS24145 (PAKB6_4765) ileS 5094641..5097472 (-) 2832 WP_003112822.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=289602 PAKB6_RS24125 WP_003094721.1 5092204..5092629(+) (comF) [Pseudomonas aeruginosa strain GIMC5015:PAKB6]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=289602 PAKB6_RS24125 WP_003094721.1 5092204..5092629(+) (comF) [Pseudomonas aeruginosa strain GIMC5015:PAKB6]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383