Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DDE72_RS16830 Genome accession   NZ_CP029034
Coordinates   3386343..3386861 (+) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus velezensis strain LDO2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3381343..3391861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS16810 (DDE72_16810) - 3382421..3382627 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  DDE72_RS16815 (DDE72_16815) - 3382674..3384677 (+) 2004 WP_032875323.1 molybdopterin-dependent oxidoreductase -
  DDE72_RS16820 (DDE72_16820) ychF 3384804..3385904 (+) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  DDE72_RS16825 (DDE72_16825) rpsF 3386016..3386303 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  DDE72_RS16830 (DDE72_16830) ssbA 3386343..3386861 (+) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  DDE72_RS16835 (DDE72_16835) rpsR 3386905..3387144 (+) 240 WP_029325793.1 30S ribosomal protein S18 -
  DDE72_RS16840 (DDE72_16840) - 3387332..3387913 (+) 582 WP_032875326.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  DDE72_RS16845 (DDE72_16845) - 3387910..3388467 (+) 558 WP_032875329.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  DDE72_RS16850 (DDE72_16850) xth 3388464..3389222 (+) 759 WP_032875332.1 exodeoxyribonuclease III -
  DDE72_RS16855 (DDE72_16855) - 3389285..3390223 (+) 939 WP_032875335.1 LacI family DNA-binding transcriptional regulator -
  DDE72_RS16860 (DDE72_16860) - 3390280..3390660 (+) 381 WP_032875338.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=289539 DDE72_RS16830 WP_007615071.1 3386343..3386861(+) (ssbA) [Bacillus velezensis strain LDO2]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=289539 DDE72_RS16830 WP_007615071.1 3386343..3386861(+) (ssbA) [Bacillus velezensis strain LDO2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372

Multiple sequence alignment