Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DDE72_RS08525 Genome accession   NZ_CP029034
Coordinates   1754056..1754835 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain LDO2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1749056..1759835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE72_RS08495 (DDE72_08495) fliH 1749100..1749855 (-) 756 WP_032874891.1 flagellar assembly protein FliH -
  DDE72_RS08500 (DDE72_08500) fliG 1749848..1750864 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  DDE72_RS08505 (DDE72_08505) fliF 1750877..1752487 (-) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  DDE72_RS08510 (DDE72_08510) fliE 1752530..1752850 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  DDE72_RS08515 (DDE72_08515) flgC 1752861..1753313 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  DDE72_RS08520 (DDE72_08520) flgB 1753313..1753702 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  DDE72_RS08525 (DDE72_08525) codY 1754056..1754835 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DDE72_RS08530 (DDE72_08530) hslU 1754873..1756276 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  DDE72_RS08535 (DDE72_08535) hslV 1756293..1756838 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  DDE72_RS08540 (DDE72_08540) xerC 1756854..1757771 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  DDE72_RS08545 (DDE72_08545) trmFO 1757841..1759148 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=289506 DDE72_RS08525 WP_003154263.1 1754056..1754835(-) (codY) [Bacillus velezensis strain LDO2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=289506 DDE72_RS08525 WP_003154263.1 1754056..1754835(-) (codY) [Bacillus velezensis strain LDO2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment