Detailed information NTG0289178

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: DCE79_RS12400
• Genome accession: NZ_CP029002
• Coordinates: 2536469..2538967 (-)
• Length: 832 a.a.
• NCBI ID: WP_108714494.1
• Uniprot ID: -
• Organism: Lysinibacillus sp. 2017
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2531469..2543967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DCE79_RS12385 (DCE79_12385)	-	2532929..2534077 (-)	1149	WP_108713348.1	3-phenylpropionate MFS transporter	-
DCE79_RS12390 (DCE79_12390)	yeiL	2534181..2534849 (+)	669	WP_108713349.1	transcriptional regulator YeiL	-
DCE79_RS12395 (DCE79_12395)	-	2534984..2536195 (-)	1212	WP_108713350.1	NupC/NupG family nucleoside CNT transporter	-
DCE79_RS12400 (DCE79_12400)	recD2	2536469..2538967 (-)	2499	WP_108714494.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DCE79_RS12405 (DCE79_12405)	hisA	2539128..2539883 (+)	756	WP_108713351.1	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	-
DCE79_RS12410 (DCE79_12410)	-	2539911..2540804 (-)	894	WP_108713352.1	manganese catalase family protein	-
DCE79_RS12415 (DCE79_12415)	-	2540868..2541086 (-)	219	WP_108713353.1	YuzF family protein	-
DCE79_RS12420 (DCE79_12420)	dtd	2541149..2541595 (-)	447	WP_108713354.1	D-aminoacyl-tRNA deacylase	-
DCE79_RS12425 (DCE79_12425)	-	2541617..2543812 (-)	2196	WP_108713355.1	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	-

Sequence

Protein

• Length: 832 a.a.
• Molecular weight: 92976.59 Da
• Isoelectric Point: 5.0380

>NTDB_id=289178 DCE79_RS12400 WP_108714494.1 2536469..2538967(-) (recD2) [Lysinibacillus sp. 2017]
MAENLNLFDLNKLFILGHPIVTIFHNATNMYSIIRVKIKETNIQYDEKEIIVVGYFPQLAEDELYRFTGHMKSHPKYGMQ
FQIDTFEKEVPTTEQGVVHYLSSDLFTGIGRKTAELIVEKLGVDAINKILNDPSALDAVPRLNDDKKLTIRQTIEENLGL
ERVMVRLNEWGFGPQLGMKIYQAYREETINLLTENPYRLIEEVEGVGFIRADELGSKLGITGNHPDRIKAAVFHVLTNAA
LSEGHVYLDAEQVLPMVKDMLEQSQRIEIPYEAISKACIEMREDSRICGEETRMYLPSLYFSEVGIASKIIELKEKNNTA
ENFSRDEIRKAIGDIEEQYNVSYAPTQAQAIETALNSSVMILTGGPGTGKTTVVRGLVEVYAELHGLSLNPKTYVEKEEP
FPIVLVAPTGRAAKRLAESTGLPAMTIHRLLGFNGHEKAEETEREVTGRLIIIDEMSMVDTWLAHQLLKALHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASKQIPTVELTDVYRQAEGSTIIEMAHQIKKGIVPDTLTAKTSDRSFIQAAAAQVTSVVTQ
IVKGALAKGQAIRDIQVLAPMYRGPAGIDNLNKEIQQLVNPNDGSRKEIVFGDTIYRIGDKVLQLVNQPENNVFNGDMGE
VIAIIRAKETVEKQDLLIVSYDGIEVTYQRHDLNQITLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRAK
NFLILCGEPDVLAKGLAKTDDLMRYTSLMARLNPALSENVAKSVKETDEKEIVVMEKVEAKKANSEEQLSLLNVSDSHKI
GETLPNHLTTETAPYIHPLIGMDNISPYDFIE

Nucleotide

• Length: 2499 bp

>NTDB_id=289178 DCE79_RS12400 WP_108714494.1 2536469..2538967(-) (recD2) [Lysinibacillus sp. 2017]
ATGGCGGAAAATCTGAATTTGTTCGATCTCAATAAGCTCTTTATTCTAGGGCATCCTATTGTGACGATTTTTCATAATGC
AACGAATATGTATTCCATTATTCGTGTCAAAATTAAAGAAACGAATATTCAATATGATGAAAAAGAAATTATTGTTGTCG
GTTATTTTCCTCAATTAGCAGAGGATGAACTCTATCGCTTTACAGGCCATATGAAAAGTCACCCAAAATACGGGATGCAA
TTTCAAATCGATACGTTTGAAAAAGAAGTGCCAACAACAGAGCAGGGCGTAGTCCATTATTTATCGAGTGATTTATTTAC
AGGTATTGGCAGGAAAACTGCTGAATTAATTGTTGAAAAACTAGGCGTCGATGCCATTAATAAAATCCTAAATGATCCAT
CTGCACTCGATGCTGTCCCTCGTTTAAATGATGATAAAAAGCTTACGATTCGTCAGACGATTGAAGAAAATTTAGGGCTA
GAGCGGGTCATGGTTCGGTTAAATGAATGGGGCTTCGGTCCACAGCTTGGCATGAAAATTTATCAAGCGTACCGTGAAGA
AACGATTAATTTACTGACAGAAAATCCGTACCGATTGATTGAAGAGGTCGAAGGGGTCGGCTTTATACGTGCAGATGAAT
TGGGTTCTAAACTAGGCATTACAGGGAATCACCCAGACCGTATAAAAGCAGCTGTATTTCATGTATTAACAAATGCGGCA
CTTTCAGAAGGACATGTCTATTTGGATGCAGAACAGGTGCTACCAATGGTTAAGGATATGCTAGAGCAAAGTCAGCGCAT
TGAAATTCCGTATGAGGCGATTTCGAAAGCGTGTATCGAAATGCGGGAGGACTCGAGAATTTGTGGTGAGGAAACGCGCA
TGTATTTGCCATCACTGTATTTTAGTGAGGTGGGTATTGCCAGTAAAATTATTGAGTTGAAAGAAAAAAATAATACAGCA
GAAAACTTCTCACGCGATGAAATTCGTAAAGCGATAGGCGATATAGAAGAGCAATATAATGTTTCGTATGCGCCAACACA
AGCGCAAGCAATTGAAACGGCGTTAAATTCAAGCGTCATGATTTTAACAGGGGGACCTGGTACCGGGAAAACAACCGTTG
TACGAGGATTAGTCGAAGTATATGCTGAATTACACGGCTTGTCGCTCAATCCAAAAACGTATGTTGAAAAAGAAGAGCCT
TTTCCAATTGTATTAGTAGCACCAACAGGACGTGCAGCAAAACGTTTAGCCGAATCTACTGGCTTACCTGCTATGACGAT
TCACCGTTTACTTGGCTTCAATGGCCATGAAAAGGCAGAAGAAACAGAACGTGAAGTTACAGGTCGTTTAATCATTATCG
ATGAAATGTCGATGGTAGATACGTGGCTGGCACATCAGTTATTAAAAGCATTGCATGAAGATGTACAAGTAGTATTTGTA
GGTGACCAAGATCAGCTCCCACCAGTAGGTCCAGGGCAAGTGTTAAAGGATTTACTTGCATCGAAGCAAATACCTACAGT
GGAGTTAACAGATGTTTATCGACAAGCAGAAGGTTCGACAATTATCGAAATGGCGCACCAAATTAAAAAAGGAATTGTTC
CAGATACATTGACTGCAAAAACTTCGGATCGTTCCTTTATTCAAGCTGCTGCTGCACAAGTAACGAGTGTTGTCACGCAA
ATTGTGAAAGGGGCACTTGCAAAAGGACAAGCGATTCGCGATATTCAAGTACTAGCACCAATGTATCGTGGACCTGCAGG
TATCGATAATTTAAATAAAGAAATACAGCAGCTCGTCAATCCAAATGACGGATCACGTAAAGAAATTGTTTTTGGTGATA
CGATATATCGCATTGGTGACAAGGTGTTGCAACTTGTAAATCAACCTGAAAACAATGTATTTAACGGGGATATGGGTGAA
GTCATCGCCATTATTCGCGCGAAAGAAACGGTTGAAAAGCAAGATTTACTTATTGTGAGTTACGATGGTATCGAGGTAAC
GTACCAACGTCATGATTTAAATCAAATTACTTTAGCGTATTGCTGCTCAATTCATAAATCACAAGGCTCTGAATTCCAAA
CGGTTATTATGCCAGTTGTGCGCGGATATTCCAAAATGTTACGACGTAATTTGCTCTATACAGGTATTACGCGCGCAAAA
AACTTTTTAATATTATGCGGAGAACCTGATGTTCTAGCGAAGGGTTTAGCAAAGACGGATGATTTAATGCGCTACACAAG
CTTAATGGCTCGATTAAATCCAGCATTATCAGAAAATGTGGCAAAATCTGTAAAAGAAACTGATGAAAAAGAGATCGTAG
TAATGGAGAAAGTGGAAGCAAAAAAAGCGAATAGTGAAGAACAATTAAGTTTACTAAATGTCTCAGATTCTCATAAAATT
GGTGAAACCTTACCGAATCACCTGACAACAGAGACAGCTCCTTATATCCATCCACTCATTGGTATGGACAATATTTCACC
TTATGATTTTATTGAATAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-651)

• AAA domain (AAA_30) (343-549)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (679-726)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	54.412	89.904	0.489