Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   D1J60_RS15510 Genome accession   NZ_CP034350
Coordinates   3358099..3359526 (+) Length   475 a.a.
NCBI ID   WP_125821497.1    Uniprot ID   -
Organism   Streptomyces sp. W1SF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3353099..3364526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J60_RS15495 (D1J60_15495) - 3354167..3355093 (-) 927 WP_125821496.1 Ppx/GppA phosphatase family protein -
  D1J60_RS15500 (D1J60_15500) - 3355266..3356012 (+) 747 WP_125604164.1 hypothetical protein -
  D1J60_RS15505 (D1J60_15505) - 3356030..3357712 (-) 1683 WP_125824048.1 sigma-70 family RNA polymerase sigma factor -
  D1J60_RS15510 (D1J60_15510) radA/sms 3358099..3359526 (+) 1428 WP_125821497.1 DNA repair protein RadA Machinery gene
  D1J60_RS15515 (D1J60_15515) disA 3359826..3360950 (+) 1125 WP_007264801.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  D1J60_RS15520 (D1J60_15520) - 3361005..3361739 (-) 735 WP_306463758.1 hypothetical protein -
  D1J60_RS15525 (D1J60_15525) - 3361963..3362583 (+) 621 WP_125821498.1 phosphatase PAP2 family protein -
  D1J60_RS15530 (D1J60_15530) - 3362607..3363542 (+) 936 WP_125821499.1 A/G-specific adenine glycosylase -
  D1J60_RS15535 (D1J60_15535) - 3363766..3364326 (+) 561 WP_007264805.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 49583.79 Da        Isoelectric Point: 8.2598

>NTDB_id=288993 D1J60_RS15510 WP_125821497.1 3358099..3359526(+) (radA/sms) [Streptomyces sp. W1SF4]
MAARTSRSSAKDRPSYRCSECGWATVKWLGRCPECQAWGTVEEMGAPAVRTTAAGRVSAAALPIAQVDGRTATARSTGVD
ELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAATGDHRTLYVTGEESASQVRLRADRINALNDHLYLAAETDLSA
VLGHLDAVKPSLLVLDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVL
SFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVDS
QIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGEV
GLAGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPPGMKVTEVADMGDALRVLPRGRSRTPARERAAAGNGAE

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=288993 D1J60_RS15510 WP_125821497.1 3358099..3359526(+) (radA/sms) [Streptomyces sp. W1SF4]
ATGGCTGCCCGTACATCTCGCTCATCCGCCAAGGACCGGCCGTCCTACCGCTGCTCCGAGTGCGGCTGGGCCACCGTGAA
ATGGCTCGGCCGGTGCCCCGAGTGCCAGGCGTGGGGGACCGTCGAGGAGATGGGCGCGCCCGCCGTACGGACCACCGCGG
CCGGCCGCGTCTCGGCCGCCGCGCTGCCGATCGCCCAGGTCGACGGGCGGACCGCGACCGCCCGCAGCACCGGCGTGGAC
GAGCTGGACCGCGTGCTCGGCGGCGGCCTCGTCCCCGGCGCCGTGGTCCTGCTGGCCGGCGAGCCGGGCGTCGGCAAGTC
GACGCTGCTGCTGGACGTCGCCGCGAAGGCGGCCACCGGCGACCACCGCACCCTCTACGTCACCGGCGAGGAGTCGGCGA
GCCAGGTGCGGCTGCGCGCCGACCGGATCAACGCCCTCAACGACCACCTCTACCTCGCCGCCGAGACCGACCTGTCCGCC
GTGCTGGGGCACCTCGACGCGGTGAAGCCCTCGCTGCTGGTCCTGGACTCCGTACAGACCATCGCCTCCCCCGAGATCGA
CGGTGCGCCCGGCGGCATGGCCCAGGTCCGCGAGGTCGCCGGCGCGCTGATCCGCGCCTCGAAGGAGCGGGGCATGGCCA
CCCTCCTCGTCGGCCACGTCACCAAGGACGGCGCCATCGCCGGCCCCCGCCTGCTGGAGCACCTCGTGGACGTGGTGCTC
AGCTTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTGCGCGGCGTGAAGAACCGCTACGGCGCCACGGACGAGGTCGG
CTGCTTCGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCAGCGGGCTGTTCCTGACCCGGCGCGCCGAGGCGG
TGCCGGGCACCTGCCTGACCGTGACCCTGGAGGGCAAGCGCCCGCTGGTCGCCGAGGTGCAGGCGCTCACCGTCGACTCG
CAGATCCCCTCCCCGCGCCGCACCACCTCGGGCCTGGAGACCTCGCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCG
CGGCCGGATCACCGCGCTGGGCAAGCGGGACATCTACAGCGCGACCGTGGGCGGGGTGAAGCTGACGGAGCCGGCCGCCG
ACCTGGCGATCGCGCTGGCCCTGGCCTCGGCGGCGAGCGACGTGCCGCTGCCGAAGAACCTGGTCGCCATCGGTGAGGTC
GGCCTGGCCGGCGAGGTGCGGCGGGTGACCGGCGTGCAGCGGCGCCTGGCCGAGGCGCACCGGCTCGGCTTCACGCACGC
GCTGGTCCCGGCGGACCCGGGGAAGGTGCCGCCGGGCATGAAGGTGACCGAGGTGGCGGACATGGGGGACGCGCTGCGGG
TCCTGCCGCGCGGGCGGTCGCGTACGCCGGCCAGGGAGCGGGCCGCGGCGGGCAACGGGGCCGAGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

95.368

0.419
  radA Streptococcus mitis NCTC 12261

43.142

95.158

0.411
  radA Streptococcus pneumoniae Rx1

42.699

95.158

0.406
  radA Streptococcus pneumoniae TIGR4

42.699

95.158

0.406
  radA Streptococcus pneumoniae D39

42.699

95.158

0.406
  radA Streptococcus pneumoniae R6

42.699

95.158

0.406
  radA Streptococcus mitis SK321

44.037

91.789

0.404

Multiple sequence alignment