Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DBK22_RS03745 Genome accession   NZ_CP028961
Coordinates   704322..705101 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM102752     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 699322..710101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBK22_RS03725 (DBK22_00752) trmFO 700009..701316 (+) 1308 WP_160241967.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  DBK22_RS03730 (DBK22_00753) xerC 701386..702303 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  DBK22_RS03735 (DBK22_00754) hslV 702319..702864 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  DBK22_RS03740 (DBK22_00755) hslU 702881..704284 (+) 1404 WP_160241968.1 HslU--HslV peptidase ATPase subunit -
  DBK22_RS03745 (DBK22_00756) codY 704322..705101 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DBK22_RS03750 (DBK22_00757) flgB 705455..705844 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  DBK22_RS03755 (DBK22_00758) flgC 705844..706296 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  DBK22_RS03760 (DBK22_00759) fliE 706307..706627 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  DBK22_RS03765 (DBK22_00760) fliF 706670..708280 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  DBK22_RS03770 (DBK22_00761) fliG 708293..709309 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  DBK22_RS03775 (DBK22_00762) fliH 709302..710057 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=288975 DBK22_RS03745 WP_003154263.1 704322..705101(+) (codY) [Bacillus velezensis strain SRCM102752]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=288975 DBK22_RS03745 WP_003154263.1 704322..705101(+) (codY) [Bacillus velezensis strain SRCM102752]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCTCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment