Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   D8X56_RS05815 Genome accession   NZ_CP034314
Coordinates   1203104..1203877 (+) Length   257 a.a.
NCBI ID   WP_125302939.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP42K     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1198104..1208877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8X56_RS05810 (D8X56_05810) hopL 1199405..1203091 (+) 3687 WP_125302936.1 Hop family outer membrane protein HopL -
  D8X56_RS05815 (D8X56_05815) proC 1203104..1203877 (+) 774 WP_125302939.1 pyrroline-5-carboxylate reductase Machinery gene
  D8X56_RS05820 (D8X56_05820) - 1203904..1204438 (+) 535 Protein_1102 Fic/DOC family protein -
  D8X56_RS05825 (D8X56_05825) ybeY 1204682..1205104 (-) 423 WP_125302941.1 rRNA maturation RNase YbeY -
  D8X56_RS05830 (D8X56_05830) - 1205158..1205651 (-) 494 Protein_1104 flavodoxin -
  D8X56_RS05835 (D8X56_05835) - 1205743..1206324 (-) 582 WP_164504012.1 DedA family protein -
  D8X56_RS05840 (D8X56_05840) ccoS 1206448..1206639 (+) 192 WP_001090949.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  D8X56_RS05845 (D8X56_05845) - 1206663..1207637 (+) 975 WP_125302946.1 NAD(P)/FAD-dependent oxidoreductase -
  D8X56_RS05850 (D8X56_05850) - 1207644..1208804 (-) 1161 WP_125302949.1 HP1165 family MFS efflux transporter -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28257.00 Da        Isoelectric Point: 8.3297

>NTDB_id=288771 D8X56_RS05815 WP_125302939.1 1203104..1203877(+) (proC) [Helicobacter pylori strain HP42K]
MEILQFIGYGNMAQAILEGAHEILSKRFILEITGRNPEKIAPFLQEKNIQARIIPYKDAIDIDQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVGFEALNNAINSLHYLKCMPNIASKFALSSTAVCEKSPMPLISQKALNIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASGLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=288771 D8X56_RS05815 WP_125302939.1 1203104..1203877(+) (proC) [Helicobacter pylori strain HP42K]
ATGGAAATCTTACAATTCATCGGCTATGGGAATATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGATTACCGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATTCAAGCGCGCATCA
TTCCCTATAAAGACGCTATTGATATAGACCAAAAATTCGTGTTTTTACTTTTTAAGCCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCCAAAAGCGTTTTGAGTGCGTTAGCTGGCGTGGGTTTTGAAGCTTTAAATAATGCGATAAATTCTTT
ACATTACTTAAAATGCATGCCCAATATTGCGAGCAAGTTCGCCCTTTCTTCTACGGCGGTGTGCGAAAAATCGCCCATGC
CCTTAATAAGCCAAAAGGCTTTGAATATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCATTTTTAAGCTTGGTAGCGAGCGGTTTGAAAGATGCCGGTATTAGGGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTGTTAGAAAAAGAACGCC
CTGAAATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTTATAAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366