Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   FORC83_RS06540 Genome accession   NZ_CP028933
Coordinates   1268688..1269203 (-) Length   171 a.a.
NCBI ID   WP_002867318.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FORC_083     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263688..1274203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC83_RS06525 (FORC83_1314) - 1263804..1265618 (-) 1815 WP_115651574.1 motility associated factor glycosyltransferase family protein -
  FORC83_RS06530 (FORC83_1315) - 1265615..1267438 (-) 1824 WP_131234771.1 motility associated factor glycosyltransferase family protein -
  FORC83_RS06535 - 1267448..1268688 (-) 1241 Protein_1287 DUF2920 family protein -
  FORC83_RS06540 (FORC83_1318) ctsG 1268688..1269203 (-) 516 WP_002867318.1 type II secretion system protein Machinery gene
  FORC83_RS06545 (FORC83_1319) tsaD 1269204..1270211 (-) 1008 WP_131234772.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  FORC83_RS06550 (FORC83_1320) - 1270208..1271602 (-) 1395 WP_131234773.1 M99 family carboxypeptidase catalytic domain-containing protein -
  FORC83_RS06555 (FORC83_1321) dxr 1271604..1272674 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FORC83_RS06560 (FORC83_1322) cdsA 1272671..1273396 (-) 726 WP_002875974.1 phosphatidate cytidylyltransferase -
  FORC83_RS06565 (FORC83_1323) - 1273405..1273743 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18706.57 Da        Isoelectric Point: 6.4683

>NTDB_id=288684 FORC83_RS06540 WP_002867318.1 1268688..1269203(-) (ctsG) [Campylobacter jejuni strain FORC_083]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=288684 FORC83_RS06540 WP_002867318.1 1268688..1269203(-) (ctsG) [Campylobacter jejuni strain FORC_083]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947

Multiple sequence alignment