Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   C1A39_RS02205 Genome accession   NZ_CP028896
Coordinates   401880..403694 (+) Length   604 a.a.
NCBI ID   WP_024704204.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 396880..408694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A39_RS02180 (C1A39_02200) - 396957..397709 (-) 753 WP_024704202.1 NUDIX hydrolase -
  C1A39_RS02185 (C1A39_02205) - 397773..398879 (-) 1107 WP_024009756.1 AAA family ATPase -
  C1A39_RS02190 (C1A39_02210) gdhA 399223..400575 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  C1A39_RS02195 (C1A39_02215) - 400833..401243 (+) 411 WP_011680804.1 peptide deformylase -
  C1A39_RS02200 (C1A39_02220) rcrR 401433..401876 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  C1A39_RS02205 (C1A39_02225) rcrP 401880..403694 (+) 1815 WP_024704204.1 ABC transporter ATP-binding protein Regulator
  C1A39_RS02210 (C1A39_02230) rcrQ 403684..405462 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  C1A39_RS02215 (C1A39_02235) - 405618..405875 (+) 258 WP_224107491.1 hypothetical protein -
  C1A39_RS02220 (C1A39_02240) - 406334..407174 (+) 841 Protein_380 HAMP domain-containing sensor histidine kinase -
  C1A39_RS02225 (C1A39_02245) pyrH 407410..408147 (+) 738 WP_002949867.1 UMP kinase -

Sequence


Protein


Download         Length: 604 a.a.        Molecular weight: 67119.80 Da        Isoelectric Point: 5.4286

>NTDB_id=288278 C1A39_RS02205 WP_024704204.1 401880..403694(+) (rcrP) [Streptococcus thermophilus strain CS5]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDIITLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
SFLAARTASSFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQMALTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGVMEDKVHLFSDMVVYSSYAMQVVMGFMMMMVVFFLLP
RAVVAAGRINEVLDTQSSVSYPEYSSEKPKEVGTVEFEDVSFRYSETSEPVLEHVSFKAKKGDTVALIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRYYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDKGKVVGQGTHEELLANNEVYQEIAYSQLSKEELEDGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=288278 C1A39_RS02205 WP_024704204.1 401880..403694(+) (rcrP) [Streptococcus thermophilus strain CS5]
ATGTTTAAAATTTTTAAACGTTTGACGGCAAAAGAGTTAAGTATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTATAACCCTCTTATCAACCAAGGGGACTAAGGCATCGGATA
TTTTTGCTTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGCTTTATGGCCTCTGTAGTGGTT
AGTTTTCTAGCTGCCAGAACAGCATCTAGTTTTACCACTCGTCTTCGTGATGATATCTTCCATCAGGTTTTAGATTTTTC
GGATGCCGAGATTAAGAAATTCTCTATTCCTAGTCTTTTGACCCGTACGACAAACGATATTACACAATTACAGATGGCAC
TGACCATGGGGTTACAGGTTATTACACAGGGACCTATTATGGCAATCTGGGCTATTACAAAGATTGCTGATAAAAATGGG
AATTGGCTTCTTGCCTTGCTTGTGGCTGTGGCAGTAATTGCCATTCTTATGCTCTTCCTCTTGATTATGGTCATGCCTAA
GCAACGTTTGATTCAGACTCTGACAGATAAACTCAATAGTGTGACGCGTGAATCTCTTACTGGGATTCGTGTGGTGCGTG
CCTATAACGCCGAGAGTTATCAAGAGGATAAGTTTGAAAAGGCCAATACTGATCTAACCCAAAACAATCTTTTCATCGGT
CGTTCTTTTGCCTTGCTGACACCGGTAATGACTGCTGTATCTAGTGGTTTGACGCTAGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGTCATGGAAGACAAGGTTCATCTCTTCTCAG
ACATGGTGGTTTACTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATGGTTGTCTTCTTCCTTCTTCCA
CGAGCAGTTGTAGCAGCTGGACGTATCAATGAAGTTTTAGATACTCAATCTTCAGTTTCTTACCCTGAATATAGTTCTGA
AAAGCCTAAAGAAGTCGGAACTGTTGAATTTGAAGACGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGAGATACGGTTGCTCTTATTGGTTCGACTGGATCTGGTAAATCAACTCTTGTCAAC
CTTATCCCACGTTTTTACGATGCAACGCAAGGAACTATAAAGGTCGATGGTGTAGATGTGAGATATTACGATCACGAAAC
CTTGCACAATATTGTTGGTTATATCCCACAAAAGGCAGTACTTTTCTCAGGGGACATCACGTCAAATATGACGATGGGAA
CCAGCAATAACAGCCCTCTTGATGACGCTAAAATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAGGCAGAAGTGGCTCAAGCTGGGTCTAACTTCTCAGGTGGTCAGAAACAACGTCTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATCTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCGATCGCAAGT
TGCGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCGCAACGCATCTCTACTATTATGGATGCT
GACCAAATCTTAGTTCTTGATAAAGGTAAGGTCGTTGGTCAAGGAACCCACGAGGAACTCTTGGCTAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAGATGGAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.438

100

0.675


Multiple sequence alignment